View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_35 (Length: 257)
Name: NF3176_high_35
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 37663786 - 37664035
Alignment:
| Q |
8 |
ccaagaatataaatacgaataaagacggcagagtcaaggcctgcatgatcaataagctcaggttcaggcatatgcaatgctgcaggcatccaattgagga |
107 |
Q |
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| T |
37663786 |
ccaagaatataaatacgaataaagacggcagagtcaaggcctgcatgatcaataagctcaggttcaggcatatgcaatgctgcaggcatccaattgagga |
37663885 |
T |
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| Q |
108 |
acctaatgtaggttccaaagtcaaggttaacaaatttcttgacaattgatctggaatttgttgggctgcttcttatccccttcagataccattttgggaa |
207 |
Q |
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| T |
37663886 |
acctaatgtaggttccaaagtcaaggttaacaaatttcttgacaattgatctggaatttgttgggctgcttcttatccccttcagataccattttgggaa |
37663985 |
T |
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| Q |
208 |
gtaaaccctatcattgaaaggctgaagtcgcaacactgcaaacgctaaaa |
257 |
Q |
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| T |
37663986 |
gtaaaccctatcattgaaaggctgaagtcgcaacactgcaaacgctaaaa |
37664035 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 55427917 - 55427966
Alignment:
| Q |
185 |
cccttcagataccattttgggaagtaaaccctatcattgaaaggctgaag |
234 |
Q |
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| T |
55427917 |
cccttgagataccattttgggaagtataccctatcattcaaaggctgaag |
55427966 |
T |
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