View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_39 (Length: 242)
Name: NF3176_high_39
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 38777049 - 38777268
Alignment:
| Q |
4 |
ccacaacaatttgatggaaaacaccctagggttgctccggcttcagcacttagcagcatgccattcacgacaacctattgaaatgtaaaaaatgtgattt |
103 |
Q |
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| T |
38777049 |
ccacaacaatttgatggaaaacaccctagggttgctccggcttcagcacttagcagcatgccattcacgaaaacctattgaaatgtaaaaaatgtgattt |
38777148 |
T |
|
| Q |
104 |
ttgataagtttttgtactctttttctgtctttcttaacaaatgtcttgtagacactagttagcataaccttaaaagttttatctcgctagtactatgaag |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
38777149 |
ttgataagtttttgtactctttttctgtttttcttaacaaatgtcttgtagacactagttagcataaccttaaaagttttatcttgatagtactatgaag |
38777248 |
T |
|
| Q |
204 |
atttcttggtgcctgtatac |
223 |
Q |
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||||||| ||||||||||| |
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| T |
38777249 |
atttctttctgcctgtatac |
38777268 |
T |
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