View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_47 (Length: 219)
Name: NF3176_high_47
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 26840233 - 26840422
Alignment:
| Q |
12 |
agcacagaaaaaatcagaagtgaatagtaacaaatgctcctcaattcaaacccattcacacaaacttcatgcaagtggccattttgtcttcaaaagcttt |
111 |
Q |
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| T |
26840233 |
agcaccgaaaaaatcagaagtgaatagtaacaaatgctcctcaattcaaacccattcacaaaaacttcatgcaagtggccattttgtcttcaaaagcttt |
26840332 |
T |
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| Q |
112 |
gaattcttagcccagcactacacttacaaacagttcctctagtttgaaatatggagttttctagccctgcactacaaagaaaaatggttc |
201 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26840333 |
gaattcttagcccagaactacactgacaaacagttcctctagtttgaaatatggagttttctagccctgcactacaaagaaaaatggttc |
26840422 |
T |
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