View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_5 (Length: 710)
Name: NF3176_high_5
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 577; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Complemental strand, 937875 - 937188
Alignment:
| Q |
18 |
gatgaatactcttaaatttatataactaatttaataaacaaatgttggaccgatttgagtgaaggattaaaggaattgaaagaacgtagttcaatgtctt |
117 |
Q |
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| T |
937875 |
gatgaatactcttaaatttatataactaatttaataaacaaatgttggaccgatttgagtgaaggattaaaggaattgaaagaacgtagttcaatgtctt |
937776 |
T |
|
| Q |
118 |
gtgaatgagaaaatactaacataacaacaaacatataacatttgtttatnnnnnnnn---tataattaacaatttccatattcaacatttgatatcaatt |
214 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
937775 |
gtgaatgagaaaatactaacataacaacaaatatataacatttgtttataaaaaaaaaaatataattaacaatttccatattcaacatttgatatcaatt |
937676 |
T |
|
| Q |
215 |
ttgcctatagtttctgacaannnnnnnnnnnnnnnnnactagcactattaacatggccttgcctggtaagcattatgatgtaccatcacacaaggaaatt |
314 |
Q |
| |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937675 |
ttgtctatagtttctgacaatttttttcttgttttttactagcactattaacatggccttgcctggtaagcattatgatgtaccatcacacaaggaaatt |
937576 |
T |
|
| Q |
315 |
gaggtatttttcagagattggaataaaacaagcgaggaagataagaagaaaaatattttcattgatttcatgattaagaatgtaaatataagcaaagtag |
414 |
Q |
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| T |
937575 |
gaggtatttttcagagattggaataaaacaagcgaggaagataagaagaaaaatattttcattgatttcatgattaagaatgtaaatataagcaaagtag |
937476 |
T |
|
| Q |
415 |
atgattctatgatgataactggaatagtggcacctccagcagctatggtagctaagagaacaggacagtctgtgcctcaactaagtgttatgaaagccat |
514 |
Q |
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| T |
937475 |
atgattctatgatgataactggaatagtggcacctccagcagctatggtagctaagagaacaggacagtctgtgcctcaactaagtgttatgaaagccat |
937376 |
T |
|
| Q |
515 |
tcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcaccaaaagaatgtcattgaagaaattgaatcctatttaattt |
614 |
Q |
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| T |
937375 |
tcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcaccaaaagaatgtcattgaagaaattgaatcctatttaattt |
937276 |
T |
|
| Q |
615 |
tctctcttgat---gtaataacatgactaatctccaattgcttgtaattgtgcaatgtttagtttgatgtttcataccatatattcat |
699 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937275 |
tctctcttgatgtagtaataacatgactaatctccaattgcttgtaattgtgcaatgtttagtttgatgtttcataccatatattcat |
937188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 377 - 686
Target Start/End: Complemental strand, 935738 - 935430
Alignment:
| Q |
377 |
tgatttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgataactggaatagtggcacctccagcagctatggtagctaagagaaca |
476 |
Q |
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||||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
935738 |
tgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatcaccagaatagtggcacctccagcagctatggtagctacgagaaca |
935639 |
T |
|
| Q |
477 |
ggacagtctgtgcctcaactaagtgttatgaaagccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcacca |
576 |
Q |
| |
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||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || || || |
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| T |
935638 |
ggacaacctgtgcctcaacgaagtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttacag |
935539 |
T |
|
| Q |
577 |
aaagaatgtcattgaagaaattgaatcctatttaattttctctcttgatgtaataacatgactaatctccaattgcttgtaattgtgcaatgtttagttt |
676 |
Q |
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||||||||||||| ||||||||||||||| |||||||||| ||| | |||||||| ||||||||||||| |||||||||| |||||||||| || | ||| |
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| T |
935538 |
aaagaatgtcattcaagaaattgaatcctgtttaattttcactc-tcatgtaatagcatgactaatctctaattgcttgtgattgtgcaatattaatttt |
935440 |
T |
|
| Q |
677 |
gatgtttcat |
686 |
Q |
| |
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|||||||||| |
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| T |
935439 |
gatgtttcat |
935430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 509 - 670
Target Start/End: Original strand, 7584363 - 7584529
Alignment:
| Q |
509 |
agccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcaccaaaagaatgtcattgaaga--aattgaatccta |
606 |
Q |
| |
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|||||||| ||||||||| | |||||||||| |||| |||| ||||||||| |||| ||||||| | |||||||||| || |||| |||||||||||| |
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| T |
7584363 |
agccattcttgatgttatatctgtcccaacaactacagttttggctctcattactgtaaaagtcatctaaagaatgtctttcaagataaattgaatccta |
7584462 |
T |
|
| Q |
607 |
tttaattttctctcttgatgtaataa---catgactaatctccaattgcttgtaattgtgcaatgtt |
670 |
Q |
| |
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|||||||| || |||| ||||||||| ||||| ||||||||||| |||||| ||||||||||||| |
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| T |
7584463 |
tttaatttcctttcttaatgtaataatagcatgattaatctccaatagcttgtgattgtgcaatgtt |
7584529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 495 - 606
Target Start/End: Original strand, 7585920 - 7586031
Alignment:
| Q |
495 |
ctaagtgttatgaaagccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcaccaaaagaatgtcattgaaga |
594 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | || | | ||||||||| ||||| |||||||||||| | ||||||| ||||||||||||||| |||| |
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| T |
7585920 |
ctaagtgttatgaaagtcattcttgatgttaccgttatactaacagctacaattttggctctcattgctataaaagtcatcaaaagaatgtcatttaaga |
7586019 |
T |
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| Q |
595 |
aattgaatccta |
606 |
Q |
| |
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|||||||||||| |
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| T |
7586020 |
aattgaatccta |
7586031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 7584250 - 7584356
Alignment:
| Q |
370 |
ttttcattgatttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgataactggaatagtggcacctccagcagctatggtagctaa |
469 |
Q |
| |
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|||||| |||||||||| |||||||| ||||||| || ||||||||||||| ||||||||| | ||||||||| ||||| ||||||||||| ||||||| |
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| T |
7584250 |
ttttcactgatttcatggttaagaatataaatattagtaaagtagatgattatatgatgatcaatggaatagtatcacctacagcagctatgatagctaa |
7584349 |
T |
|
| Q |
470 |
gagaaca |
476 |
Q |
| |
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||||||| |
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|
| T |
7584350 |
gagaaca |
7584356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 7584048 - 7584115
Alignment:
| Q |
252 |
actagcactattaacatggccttgcctggtaagcattatgatgtaccatcacacaaggaaattgaggt |
319 |
Q |
| |
|
||||||||||| |||||||| |||| |||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
7584048 |
actagcactatcaacatggcattgcgtggttagcatcatgatgtaccatcaaacaaggaaattgaggt |
7584115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 7579324 - 7579370
Alignment:
| Q |
436 |
gaatagtggcacctccagcagctatgg-tagctaagagaacaggaca |
481 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||| |||| |
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| T |
7579324 |
gaatattggcacctccagcagctatggttagctaagagaacaagaca |
7579370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 565
Target Start/End: Original strand, 38410308 - 38410495
Alignment:
| Q |
381 |
ttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgataactggaatagtggcacctccagcagctatggtagctaagagaacaggac |
480 |
Q |
| |
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||||||| ||||||||| ||| | | |||||||||||| |||||||| || |||||||||||||||| |||||||| || || ||||| |||||||||| |
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| T |
38410308 |
ttcatgaataagaatgtgaatctcaacaaagtagatgaatctatgataatcgctggaatagtggcaccaccagcagccatagtggctaaaagaacaggac |
38410407 |
T |
|
| Q |
481 |
a---gtctgtgcctcaactaagtgttatgaaagccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgt |
565 |
Q |
| |
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| | | ||||| |||| ||||||| | ||||||||||||||||||||| || ||||||| |||| |||||||||||||| |
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| T |
38410408 |
aaacaacatttcctcagctaaaatttatgaatgtcattcctgatgttatctttgttccctcagctacagttttggctctcattgctgt |
38410495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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