View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_7 (Length: 547)
Name: NF3176_high_7
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 21 - 541
Target Start/End: Complemental strand, 56315900 - 56315381
Alignment:
| Q |
21 |
tttagctaagagggatttattaaattaaagagatttaaatccttaacccctgaaccgccacaatcctttgttctacaaacatccccccatttcactcaca |
120 |
Q |
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| T |
56315900 |
tttagctaagagggatttattaaattaaagagatttaaatccttaacccctaaactgccacaatcctttgttctacaaacatccccccatttcactcaca |
56315801 |
T |
|
| Q |
121 |
aaattttacgattaccaattgtcccaccctaaagaaaacatctctgaatttgaataatcattttccacacatgcatttcgaaaaagaacatatagaaagt |
220 |
Q |
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| T |
56315800 |
aaattttacgattaccaattgtcccaccctaaagaaaacatctatgaatttgaataatcattttccacacatgcatttcgaaaaagaacatatagaaagt |
56315701 |
T |
|
| Q |
221 |
tggaattgaaccaagaaccaaattgatcaaaaccaatctccctcccaaaataacatacttattctgccaaaagcccaacctcctttcaatcgctttaacc |
320 |
Q |
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| T |
56315700 |
tggaattgaaccaagaaccaaattgatcaaaaccactctccctcccaaactaacatacttattccgccaaaagcccaacctcctttcaattgctttaacc |
56315601 |
T |
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| Q |
321 |
accgagtttgaagttgatgatttcttcgaatttgcactcaccggatggccaaaatagatgaaaaggatttcacccactacacaatgtaaaaagtttgccg |
420 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
56315600 |
accgggtttgaagttgatgatttcttcgaatttgcactcactggaaggccaaaatagatgaaaaggaattcacctactacacaatgtaaaaagtttgccg |
56315501 |
T |
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| Q |
421 |
catttcacaaaaatacgcctaaacattacgccaaaaacctactattgaagaaattaaccttcaatccaaacaccaccctcttcgagtttggaagcataaa |
520 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
56315500 |
catttcacaaaaatacgcctaaa-attacgccaaaaacctactattgaagaaattaaccttcaatccaaacaccatcttcttcgagtttggaagcataaa |
56315402 |
T |
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| Q |
521 |
ccctttgaagaagcctaaaga |
541 |
Q |
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| T |
56315401 |
ccctttgaagaagcctaaaga |
56315381 |
T |
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