View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_high_9 (Length: 535)

Name: NF3176_high_9
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_high_9
NF3176_high_9
[»] chr3 (24 HSPs)
chr3 (269-517)||(49579328-49579584)
chr3 (102-278)||(49579138-49579314)
chr3 (111-188)||(3354920-3354997)
chr3 (1-53)||(49579046-49579098)
chr3 (117-188)||(43902534-43902604)
chr3 (111-188)||(33687949-33688026)
chr3 (111-183)||(33687611-33687683)
chr3 (114-188)||(15311841-15311914)
chr3 (111-189)||(16883492-16883570)
chr3 (111-188)||(16883769-16883846)
chr3 (111-187)||(26465970-26466047)
chr3 (111-184)||(3354755-3354828)
chr3 (112-188)||(33381511-33381588)
chr3 (116-187)||(12921450-12921521)
chr3 (117-188)||(50420862-50420933)
chr3 (121-155)||(1807645-1807679)
chr3 (117-187)||(43902807-43902877)
chr3 (118-189)||(51453543-51453613)
chr3 (121-187)||(12921716-12921782)
chr3 (118-156)||(47284533-47284571)
chr3 (118-188)||(53255266-53255336)
chr3 (118-156)||(54716748-54716786)
chr3 (118-155)||(17258172-17258209)
chr3 (118-155)||(40988633-40988670)
[»] chr7 (24 HSPs)
chr7 (111-189)||(27756266-27756344)
chr7 (111-188)||(35793377-35793454)
chr7 (111-188)||(35828351-35828428)
chr7 (118-188)||(9477432-9477502)
chr7 (117-187)||(24432636-24432705)
chr7 (117-177)||(47030288-47030348)
chr7 (114-188)||(28960650-28960722)
chr7 (118-187)||(9477136-9477205)
chr7 (112-161)||(43657831-43657880)
chr7 (111-163)||(967652-967704)
chr7 (111-187)||(44565266-44565342)
chr7 (118-188)||(30283408-30283478)
chr7 (119-188)||(24432338-24432407)
chr7 (304-364)||(9907094-9907154)
chr7 (128-188)||(21939326-21939386)
chr7 (111-166)||(15327726-15327780)
chr7 (128-187)||(46265868-46265927)
chr7 (123-174)||(47113363-47113414)
chr7 (118-152)||(24679086-24679120)
chr7 (118-187)||(6792038-6792107)
chr7 (118-199)||(7873500-7873581)
chr7 (111-156)||(43724596-43724641)
chr7 (128-188)||(3318320-3318380)
chr7 (123-187)||(9500149-9500213)
[»] scaffold1088 (1 HSPs)
scaffold1088 (111-187)||(2105-2180)
[»] scaffold0006 (1 HSPs)
scaffold0006 (111-189)||(162278-162356)
[»] chr5 (25 HSPs)
chr5 (111-187)||(20986949-20987025)
chr5 (117-189)||(36501403-36501473)
chr5 (111-188)||(38498121-38498198)
chr5 (117-188)||(37426695-37426765)
chr5 (121-187)||(36628671-36628737)
chr5 (124-188)||(20364684-20364748)
chr5 (112-187)||(12167100-12167175)
chr5 (121-188)||(38944178-38944245)
chr5 (118-188)||(11167875-11167945)
chr5 (320-369)||(4873488-4873537)
chr5 (112-166)||(37426436-37426490)
chr5 (134-189)||(16644976-16645031)
chr5 (128-187)||(42169087-42169146)
chr5 (127-188)||(34605-34663)
chr5 (142-188)||(2427034-2427080)
chr5 (118-188)||(6464317-6464387)
chr5 (118-156)||(10169049-10169087)
chr5 (118-156)||(16039742-16039780)
chr5 (142-188)||(20369402-20369448)
chr5 (117-155)||(22408787-22408825)
chr5 (123-185)||(36400470-36400532)
chr5 (128-181)||(36898642-36898696)
chr5 (116-181)||(14189673-14189738)
chr5 (128-189)||(18159713-18159774)
chr5 (314-371)||(33531083-33531140)
[»] chr1 (31 HSPs)
chr1 (111-187)||(13574818-13574896)
chr1 (114-187)||(31651337-31651409)
chr1 (111-187)||(1484658-1484734)
chr1 (117-189)||(39411894-39411964)
chr1 (121-188)||(10532217-10532283)
chr1 (111-188)||(29816121-29816195)
chr1 (111-189)||(10532492-10532570)
chr1 (117-187)||(29816413-29816482)
chr1 (113-180)||(10231113-10231180)
chr1 (111-189)||(13575137-13575214)
chr1 (118-188)||(37008219-37008289)
chr1 (114-179)||(31651643-31651708)
chr1 (111-188)||(51690435-51690512)
chr1 (111-179)||(1484381-1484449)
chr1 (112-168)||(22347539-22347595)
chr1 (111-170)||(39411604-39411662)
chr1 (117-187)||(83893-83963)
chr1 (111-187)||(6940901-6940975)
chr1 (118-187)||(31907934-31908003)
chr1 (314-371)||(52575555-52575612)
chr1 (118-153)||(367161-367196)
chr1 (111-189)||(84255-84332)
chr1 (118-188)||(7196953-7197023)
chr1 (118-156)||(13344417-13344455)
chr1 (118-188)||(40345572-40345642)
chr1 (111-188)||(39384562-39384639)
chr1 (324-369)||(43702718-43702763)
chr1 (116-181)||(50379956-50380021)
chr1 (128-188)||(1096469-1096529)
chr1 (128-188)||(5287826-5287886)
chr1 (320-364)||(12268208-12268252)
[»] chr8 (24 HSPs)
chr8 (112-189)||(29219359-29219436)
chr8 (111-188)||(4694989-4695067)
chr8 (114-188)||(9498911-9498985)
chr8 (111-188)||(9234715-9234792)
chr8 (111-187)||(34232761-34232835)
chr8 (118-188)||(8409807-8409876)
chr8 (118-188)||(45522433-45522503)
chr8 (111-188)||(5899514-5899591)
chr8 (118-195)||(29919070-29919146)
chr8 (117-180)||(29219086-29219149)
chr8 (114-187)||(2044678-2044750)
chr8 (132-189)||(4461675-4461732)
chr8 (117-189)||(5899210-5899283)
chr8 (314-386)||(12112091-12112162)
chr8 (111-187)||(18929305-18929381)
chr8 (132-187)||(2802651-2802706)
chr8 (142-189)||(9499223-9499270)
chr8 (118-156)||(7477371-7477409)
chr8 (118-188)||(14170424-14170494)
chr8 (118-155)||(5645767-5645804)
chr8 (111-156)||(7658826-7658871)
chr8 (118-187)||(25896993-25897062)
chr8 (118-155)||(29196604-29196641)
chr8 (118-187)||(29340771-29340840)
[»] chr4 (28 HSPs)
chr4 (111-188)||(3369849-3369926)
chr4 (111-188)||(30627008-30627085)
chr4 (112-189)||(33090527-33090603)
chr4 (117-189)||(16322978-16323050)
chr4 (111-187)||(49000598-49000673)
chr4 (304-382)||(23125839-23125917)
chr4 (113-187)||(30626587-30626660)
chr4 (118-188)||(53831154-53831224)
chr4 (117-188)||(11787065-11787135)
chr4 (117-188)||(11799232-11799302)
chr4 (111-182)||(54953732-54953801)
chr4 (111-160)||(33122853-33122902)
chr4 (111-158)||(15845162-15845209)
chr4 (118-156)||(26858378-26858416)
chr4 (118-188)||(30064004-30064074)
chr4 (128-166)||(45917584-45917622)
chr4 (324-382)||(48087297-48087354)
chr4 (320-369)||(229943-229992)
chr4 (111-188)||(1096534-1096611)
chr4 (119-180)||(5303781-5303842)
chr4 (116-181)||(9180654-9180719)
chr4 (143-188)||(13826280-13826325)
chr4 (118-187)||(47742234-47742303)
chr4 (118-187)||(47742586-47742655)
chr4 (111-144)||(48188326-48188359)
chr4 (118-155)||(49804338-49804375)
chr4 (111-188)||(55038155-55038232)
chr4 (128-188)||(23759825-23759885)
[»] chr6 (17 HSPs)
chr6 (111-187)||(1894717-1894791)
chr6 (111-194)||(2164692-2164775)
chr6 (111-194)||(2176325-2176408)
chr6 (112-180)||(1615034-1615103)
chr6 (120-188)||(30369786-30369853)
chr6 (111-170)||(12101692-12101751)
chr6 (111-188)||(2164422-2164498)
chr6 (111-188)||(2176055-2176131)
chr6 (120-188)||(15139574-15139642)
chr6 (111-166)||(1614838-1614893)
chr6 (118-155)||(12799034-12799071)
chr6 (118-189)||(499346-499417)
chr6 (118-188)||(2538985-2539054)
chr6 (118-156)||(2840823-2840861)
chr6 (118-156)||(12730577-12730615)
chr6 (117-166)||(1894472-1894521)
chr6 (128-188)||(8223982-8224042)
[»] chr2 (18 HSPs)
chr2 (111-187)||(23993894-23993970)
chr2 (111-189)||(35125158-35125235)
chr2 (111-188)||(23993725-23993801)
chr2 (111-188)||(14289268-14289344)
chr2 (117-186)||(31226855-31226924)
chr2 (111-187)||(31227123-31227199)
chr2 (118-188)||(9780927-9780997)
chr2 (111-188)||(10522645-10522722)
chr2 (118-187)||(29370719-29370788)
chr2 (118-155)||(35500333-35500370)
chr2 (113-168)||(3198477-3198532)
chr2 (117-188)||(13491481-13491550)
chr2 (118-188)||(14816039-14816109)
chr2 (118-188)||(14983942-14984012)
chr2 (118-156)||(35180527-35180565)
chr2 (118-156)||(37343686-37343724)
chr2 (314-371)||(16870207-16870264)
chr2 (320-369)||(43994369-43994418)
[»] scaffold0286 (2 HSPs)
scaffold0286 (111-194)||(17634-17717)
scaffold0286 (111-188)||(17911-17987)
[»] scaffold0010 (1 HSPs)
scaffold0010 (111-187)||(128150-128226)
[»] scaffold0172 (2 HSPs)
scaffold0172 (117-188)||(9878-9948)
scaffold0172 (111-155)||(9580-9624)
[»] scaffold0092 (1 HSPs)
scaffold0092 (111-188)||(37786-37862)
[»] scaffold0400 (1 HSPs)
scaffold0400 (112-146)||(8581-8615)
[»] scaffold0365 (1 HSPs)
scaffold0365 (112-146)||(9224-9258)
[»] scaffold0047 (2 HSPs)
scaffold0047 (118-156)||(63069-63107)
scaffold0047 (118-156)||(63305-63343)
[»] scaffold0025 (1 HSPs)
scaffold0025 (111-189)||(151600-151677)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 269 - 517
Target Start/End: Original strand, 49579328 - 49579584
Alignment:
Q  269 tgagtcatattaataattttacacatcatctcagcaaa------acttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagttta 362  Q
    ||||||||||||||||||||| ||||||||||||||||      | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49579328 tgagtcatattaataattttaaacatcatctcagcaaagttaaaaattattaaatgaatcctattaataactcaatgttattgtatgtcaataaagttta 49579427  T
Q  363 ttaattttttatacaatttaataagcttgtctcatacaaattaaaaagagggtgctttcgtaaccac--ctctctccaccgttgtagatgctctaaggta 460  Q
    |||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  49579428 ttaattttttatacaatttaataaacttgtctcgtacaaattgaagagagagtgctttcgtaaccacctctctctccaccgttgtggatgctctaaggta 49579527  T
Q  461 tactagcatctcttgcccatttgaagagataaattctgaatttttatatcgtatgag 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49579528 tactagcatctcttgcccatttgaagagataaattctgaatttttatatcgtatgag 49579584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 49579138 - 49579314
Alignment:
Q  102 tacacatgtggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaataaaac 201  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  49579138 tacacatgtggctgaattgtattttattttgttaggggactaaaatcgcaactttctgatacttaaggggtcaaaactgctattaagcataaaataaaac 49579237  T
Q  202 actataaagctcttaaaatatgagttgaaagaccatctacaatatagtcctctattaggtgcttaattgagtcatat 278  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49579238 actataaagttcttaaaatatgagttgaaagaccatttacaatatagtcctctattaggtgcttaattgagtcatat 49579314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 3354920 - 3354997
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  | ||||||| |||| |||| |||||||||||    
T  3354920 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcttgatacttagggggccaaatctgctattaag 3354997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49579046 - 49579098
Alignment:
Q  1 agatttatacagtgttagaatttctacaaatgagctgattgacaactctaata 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49579046 agatttacacagtgttagaatttctacaaatgagctgattgacaactctaata 49579098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 43902604 - 43902534
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  43902604 attgtattttattttgttaaggggccaaaatcacaacttcctaatacttaaggggtc-aaactgctattaag 43902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 33687949 - 33688026
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||||||||||  || |||||||||||||| |||||||  | | ||||||||||||||||    
T  33687949 ggctgaattgtattttattttgttagggggtcagaatcgcaactttctgatacttagagagccaaaactgctattaag 33688026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 33687683 - 33687611
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgcta 183  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| |||| ||||| |||||    
T  33687683 ggctggattgtattttattttgttagggggctaaaatcgcaactttctgatacttagggggccaaaaatgcta 33687611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 15311914 - 15311841
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||||||| ||||||| |||||||  |||||||||  || |||||||||||||||||    
T  15311914 tgaattgtattttattttgttagggg-ccaaaattgcaacttcataatacttagaggatcaaaactgctattaag 15311841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 16883570 - 16883492
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||| |||||||||||||||| ||  ||||||| |||||| || ||||||| ||||||||||||| ||||||||    
T  16883570 ggctgaattatattttattttgttagagggtcaaaatcacaacttcctgatacttagggggtcaaaactgttattaagt 16883492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 16883769 - 16883846
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||||| ||||||| |||| ||||| | ||||||||    
T  16883769 ggctggattgtattttaatttgttagggggtcaaaatcgcaactttctgatacttagggggccaaaaatactattaag 16883846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 26466047 - 26465970
Alignment:
Q  111 ggctgaattgtattttattttgtta-ggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||  |||||||||  ||||||||| || ||||||    
T  26466047 ggctgaattgtattttattttgttaggggggccaaaatcgcaacttcataatacttagtgggtcaaaaatgatattaa 26465970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 3354828 - 3354755
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctat 184  Q
    ||||| ||||||||||||||| ||||| | |||||||||||| || || ||||||| |||| ||||||||||||    
T  3354828 ggctggattgtattttattttcttaggaggccaaaatcgcaatttcctgatacttagggggccaaaactgctat 3354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 33381588 - 33381511
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta-aggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| ||||||||||  |||| || |||||||||||||    
T  33381588 gctgaattgtattttattttgttaaggggtcaaaattgcaacttcctaatacttaggggggccataactgctattaag 33381511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 12921521 - 12921450
Alignment:
Q  116 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||| |||||||||||||||| ||  |||||| ||| ||||||||||||||  |||||||||| ||||||||    
T  12921521 aattttattttattttgttagagggtcaaaattgcatctttctaatacttagagggtcaaaacggctattaa 12921450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 50420862 - 50420933
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||||||||| |||  ||||||||||||||  ||||||||| | || ||||||||||||||||    
T  50420862 attgtgttttattttgttaaggggtcaaaatcgcaacttcataatacttaggaggccaaaactgctattaag 50420933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 1807645 - 1807679
Alignment:
Q  121 tattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||||||||||||||||||||||||    
T  1807645 tattttattttgttaggggaccaaaatcgcaactt 1807679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 43902807 - 43902877
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||||||||    |||| ||||||||||||||||||| ||   ||||||||||||||    
T  43902807 attgtattttattttgttagggggttgaaattgcaactttctaatacttaaaggactaaaactgctattaa 43902877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 51453613 - 51453543
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| ||||||| ||||||||  ||||||||||||||  ||| || || ||||||||||||||||||||||    
T  51453613 ttgtagtttatttagttagggggtcaaaatcgcaacttcttaaaacata-ggggtcaaaactgctattaagt 51453543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 12921716 - 12921782
Alignment:
Q  121 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||| ||||  | ||||||| ||| ||||||||||||||  ||||||||| |||||||||    
T  12921716 tattttattttattagaaggccaaaattgcatctttctaatacttagagggtcaaaagtgctattaa 12921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 47284533 - 47284571
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  47284533 ttgtattttaattagttaggggaccaaaatcgcaacttt 47284571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 53255266 - 53255336
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| |||||||| |||||||||||||||  ||| || || | || ||||||||||||||||    
T  53255266 ttgtagtttatttagttagggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaag 53255336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 54716748 - 54716786
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  54716748 ttgtattttaattagttaggggaccaaaatcgcaacttt 54716786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 17258172 - 17258209
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  17258172 ttgtattttaatttgttaggggtccaaaatcgcaactt 17258209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 40988670 - 40988633
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||| || ||||||||||||||||||||||||    
T  40988670 ttgtattttaattagttaggggaccaaaatcgcaactt 40988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 27756344 - 27756266
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  27756344 ggctggattgtattttattttgttagggggccaaaatcgcaactacctaatacttaaggggccaaaactgctattaagt 27756266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 35793454 - 35793377
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||| | ||| |||| ||||||||||||||||    
T  35793454 ggctgaattgtattttattttgttaggggcctaaaatcgcaacttcctaaaatttagggggccaaaactgctattaag 35793377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 35828428 - 35828351
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||| |||||||||| |  ||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  35828428 ggctgaattgtattttgttttgttaggaggtcaaaatcgcaactttctgatatttaagaggtcaaaactgctattaag 35828351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 9477432 - 9477502
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||||||||||||||| ||| || || | |||||||||||||||||||    
T  9477432 ttgtattttattttgttagggggccaaaatcgcaactttttaaaacataggaggtcaaaactgctattaag 9477502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 24432636 - 24432705
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||||| |  ||||||||||||||  ||||||||||||||| |||||||||||||||    
T  24432636 attgtattttattttgttagtgagccaaaatcgcaactc-ctaatacttaaggggccaaaactgctattaa 24432705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 47030348 - 47030288
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaa 177  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||||||    
T  47030348 attgtattttattttgttatgggatcaaaatcgcaactttcttatacttaggggatcaaaa 47030288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 28960722 - 28960650
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||||||||||| ||||||  | |||||| ||||| ||||||||||||||||    
T  28960722 tgaattgtattttattttgtta-gggaccaaaatcacaacttcttgatactt-aggggccaaaactgctattaag 28960650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 9477205 - 9477136
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||| ||| | |||||||||||||| ||| || || |||| |||||||||||||||    
T  9477205 ttgtattttattttgttaaggggctaaaatcgcaactttttaaaacatagggggccaaaactgctattaa 9477136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 43657831 - 43657880
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaat 161  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  43657831 gctgaattgtattttattttgttagggtgccaaaatcgcaacttcctaat 43657880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 967652 - 967704
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatac 163  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||| ||||    
T  967652 ggctgaattgtattttattttgttagaggactaaaatcacaactttctgatac 967704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 44565342 - 44565266
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||| | ||||||||||||||| | ||||||| |||||||  ||||||||| |||||||||| | |||||||    
T  44565342 ggctgaattattttttattttgttaggaggccaaaattgcaacttcataatacttagggggtcaaaaatactattaa 44565266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 30283478 - 30283408
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||| ||| |||||||||||||||  | | || |||||||| |||||||| ||||||    
T  30283478 ttgtattttattttgttatggggccaaaatcgcaacttcttgaaacataaggggtaaaaactgcaattaag 30283408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 24432407 - 24432338
Alignment:
Q  119 tgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||| ||||||  |||||||||||||||  | |||||||  ||||||||| ||||||||||    
T  24432407 tgtattttatttttttagggagccaaaatcgcaacttcttgatacttagtgggtcaaaattgctattaag 24432338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 9907094 - 9907154
Alignment:
Q  304 aaaacttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagtttatt 364  Q
    |||| |||||||||  ||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  9907094 aaaagttattaaatagatcctattaataactcaatgtcattgtatctcaaaaaagtttatt 9907154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 21939326 - 21939386
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| ||||||| |||||||||||||||  | ||||||| |||| ||||||||||||||||    
T  21939326 tttttttagggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaag 21939386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 15327780 - 15327726
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 166  Q
    ||||||||||||||||||||||||||||| ||||||| |||| || || |||||||    
T  15327780 ggctgaattgtattttattttgttagggg-ccaaaattgcaaattccttatactta 15327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 46265927 - 46265868
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||| ||||||| |||||||| ||||||  ||| ||||||||||| ||||||||||||||    
T  46265927 ttttcttagggggccaaaatcccaacttcttaaaacttaaggggttaaaactgctattaa 46265868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 47113363 - 47113414
Alignment:
Q  123 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtca 174  Q
    |||| |||||||||||| |||||||||||||||| ||| | |||||||||||    
T  47113363 tttttttttgttagggggccaaaatcgcaactttttaaaagttaaggggtca 47113414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 24679086 - 24679120
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaa 152  Q
    |||||||||||||||||||||| ||||||||||||    
T  24679086 ttgtattttattttgttagggggccaaaatcgcaa 24679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 6792038 - 6792107
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||| |||| ||||||||||||||||||||||||  || | ||| ||||  ||||||||||||||    
T  6792038 ttgtagttttttttcttaggggaccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 6792107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 7873581 - 7873500
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaataaa 199  Q
    ||||| ||||||| |||||||| ||||||||||||||   | | || || |||||||||||||| ||||||  |||||||||    
T  7873581 ttgtagtttatttagttagggggccaaaatcgcaactccttgaaacatagggggtcaaaactgcaattaagcctaaaataaa 7873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 43724641 - 43724596
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||| |||||||||| || |||||||| ||||||||||||||||    
T  43724641 ggctgatttgtattttaattagttagggggccaaaatcgcaacttt 43724596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 3318380 - 3318320
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| ||||||||||||||||||||||||  || | ||||||||  |||||| ||||||||    
T  3318380 tttttttaggggaccaaaatcgcaactttggaaaagttaaggggctaaaactcctattaag 3318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 9500149 - 9500213
Alignment:
Q  123 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||| |||| |||||||||||||||||||||||  | | ||||| ||||  ||||||||||||||    
T  9500149 tttttttttcttaggggaccaaaatcgcaacttcttgaaacttagggggctaaaactgctattaa 9500213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 2105 - 2180
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || || |||||||||||||||    
T  2105 ggctgaattgtattttattttgttagggggccaaaatcgcaactttctaatgctt-agaggacaaaactgctattaa 2180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 162278 - 162356
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||| | ||||||||||||| |||||||||||||||||    
T  162278 ggctgtattgtattttattttgttagggggccaaaatcacatcttcccaatacttaaggggccaaaactgctattaagt 162356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 20987025 - 20986949
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||| ||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||||||    
T  20987025 ggctgaattgtatttaattttgttaggagatcaaaatcacaactttctgatacttagagggtcaaaactgctattaa 20986949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 36501473 - 36501403
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||| | ||||||    
T  36501473 attgtattttattttgttaggggaccaaaatcgcaacttcctgatacttaa--ggtcaaaactgttgttaagt 36501403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 38498198 - 38498121
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||| || ||||||| | |||||||||||||||||||    
T  38498198 ggctgaattgtattttatttttttagggggcgaaaattgcaacttcctgatacttaggtggtcaaaactgctattaag 38498121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 37426695 - 37426765
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  37426695 attgtattttattttgttagggg-ctaaaattgcaactttctgatacttagggggccaaaactgctattaag 37426765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 36628671 - 36628737
Alignment:
Q  121 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||| || ||||||| ||||||||    
T  36628671 tattttattttattaggggaccaaaattgcaacttcctaatacttaaaggatcaaaaccgctattaa 36628737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 20364748 - 20364684
Alignment:
Q  124 tttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||  |||||||||||||| || ||||||| |||| ||||||||||||||||    
T  20364748 tttattttgttagggggtcaaaatcgcaacttcctgatacttagggggacaaaactgctattaag 20364684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 12167100 - 12167175
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||| ||||||||||||||||||| |||||||||||   |||||| ||||||||| |||| || ||||||||||||    
T  12167100 gctggattgtattttattttgttaagggaccaaaattataactttttaatacttatgggggcagaactgctattaa 12167175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 38944178 - 38944245
Alignment:
Q  121 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||| | | ||| ||| ||||||| ||||||||||||||| ||||||||||||||||    
T  38944178 tattttattttgttaagaggccataattgcaacttcctaatacttaaggggccaaaactgctattaag 38944245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 11167945 - 11167875
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| |||||||| ||||||| |||||||| ||| ||| | |||||||||||||||||||| ||||||||    
T  11167945 ttgtaatttattttcttagggggccaaaatcacaagtttgtgatacttaaggggtcaaaactactattaag 11167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 4873488 - 4873537
Alignment:
Q  320 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 369  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  4873488 atcctattaataactcaatgttattgtatttcaacaaagtttattaattt 4873537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 37426490 - 37426436
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 166  Q
    |||||||||||||||||||||||| | |  |||| ||||||||||||||||||||    
T  37426490 gctgaattgtattttattttgttaagaggtcaaagtcgcaactttctaatactta 37426436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 16645031 - 16644976
Alignment:
Q  134 taggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||||||| ||||||||||  || | |||||||||||||||||||||| |||||||    
T  16645031 taggggactaaaatcgcaaaattgtgatacttaaggggtcaaaactgcaattaagt 16644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 42169146 - 42169087
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||||||  |||||| |||||||||||||||||| |||| ||||||| |||||||    
T  42169146 ttttgctaggggttcaaaattgcaactttctaatacttagggggccaaaactactattaa 42169087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 34605 - 34663
Alignment:
Q  127 attttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| |||| ||||||||||||||||  |||||||||| |||||||||||||| |||||||    
T  34605 atttttttagaggaccaaaatcgcaac--tctaatactt-aggggtcaaaactgttattaag 34663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 2427080 - 2427034
Alignment:
Q  142 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||||||    
T  2427080 caaaatctcaacttcctaatacttagggggtcaaaactgttattaag 2427034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 6464317 - 6464387
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| |||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  6464317 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 6464387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 10169087 - 10169049
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  10169087 ttgtattttaattagttaggggaccaaaatcgcaacttt 10169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 16039742 - 16039780
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  16039742 ttgtattttaattagttaggggaccaaaatcgcaacttt 16039780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 20369448 - 20369402
Alignment:
Q  142 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||| |||||||  ||| ||||||||||||||||    
T  20369448 caaaatcgcaactttctgatacttagcgggacaaaactgctattaag 20369402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 22408787 - 22408825
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  22408787 attgtattttattttgttagggggtcaaaatcgcaactt 22408825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 36400532 - 36400470
Alignment:
Q  123 ttttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctatt 185  Q
    |||| |||| |||||||||||||||||||||||  ||| |||||  |||| ||||||||||||    
T  36400532 ttttttttttttaggggaccaaaatcgcaacttcttaaaacttatagggttaaaactgctatt 36400470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 36898642 - 36898696
Alignment:
Q  128 ttttgttaggg-gaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 181  Q
    ||||||||||| | |||||||||||||||| ||||||||| ||||||||| ||||    
T  36898642 ttttgttagggaggccaaaatcgcaactttttaatacttagggggtcaaatctgc 36898696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 14189738 - 14189673
Alignment:
Q  116 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 181  Q
    ||||||| ||| |||| ||||||||||||||||||| |||| | | | ||| ||||||||||||||    
T  14189738 aattgtaattttttttattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 14189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 18159774 - 18159713
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||||||| |||  ||||||||||||||||| ||||||| | || ||||||||| |||||||    
T  18159774 ttttgttaagggttcaaaatcgcaactttctgatacttacgaggccaaaactgcaattaagt 18159713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 33531140 - 33531083
Alignment:
Q  314 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 371  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||| ||||||    
T  33531140 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattgattttt 33531083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 13574896 - 13574818
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttct--aatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||||||||||||| |||||||   ||||||||  |||||||||||||||||||||| ||||||    
T  13574896 ggctgaattgtattttattttgttagggggccaaaattataactttctaaaatacttaaggggtcaaaactgttattaa 13574818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 31651409 - 31651337
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  31651409 tgaattgaattttattttgttaagg-accaaaatcgcaactttctaatacttatggggccaaagctgctattaa 31651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 1484658 - 1484734
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||| ||||||||||  ||| |||||||||||||||    
T  1484658 ggctgaattgtattttactttgttagggggtcaaaatcacaacttcctaatacttagagggccaaaactgctattaa 1484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 39411894 - 39411964
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  39411894 attgtattttattttgttagggg-tcaaaatcgcaactttcttatactt-aggggtcaaaactgcaattaagt 39411964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 10532283 - 10532217
Alignment:
Q  121 tattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||| |||| | ||||||||||||| |||||||||| |||||||||||||||||||||    
T  10532283 tattttattttgttgggggtc-aaaatcgcaacttcctaatacttagggggtcaaaactgctattaag 10532217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 29816195 - 29816121
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||||||| ||||||   |||||| || ||||||| |||||||||| ||||||||||    
T  29816195 ggctgaattgtattttattttgttagggggccaaaa---caacttcctgatacttagggggtcaaaattgctattaag 29816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 10532492 - 10532570
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| |||||||||||||||||| | || ||||||||| ||||| ||||||| || |||| |||||||||||||||||    
T  10532492 ggctggattgtattttattttgttggagggccaaaatcgtaacttcctaatacatagggggccaaaactgctattaagt 10532570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 29816413 - 29816482
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||||| |||||||    
T  29816413 attgtattttattttgtt-ggggaccaaaatcgcaacttcttgatatttaaggggtcaaaactactattaa 29816482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 10231113 - 10231180
Alignment:
Q  113 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 180  Q
    |||||||||||||||||||||||| || ||||||||| |||||  ||||||||| |||| ||||||||    
T  10231113 ctgaattgtattttattttgttagagggccaaaatcgaaacttcttaatacttagggggccaaaactg 10231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 13575137 - 13575214
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| ||| || ||||||| ||||  ||||||||||||||||    
T  13575137 ggctggattgtattttattttgttatggg-ccaaaatcgcatcttcctgatacttagggggctaaaactgctattaagt 13575214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 37008289 - 37008219
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  37008289 ttgtattttattttgttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 37008219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 31651643 - 31651708
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaact 179  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||| |||  |||||||    
T  31651643 tgaattatattttattttgttaagggatcaaaatcacaactttctaatacttatgggaccaaaact 31651708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 51690435 - 51690512
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||  ||| ||| | | |||||||| ||||||||    
T  51690435 ggctgaattgtattttattttgttacgaggccaaaatcgcaactttcggatatttaggagatcaaaactactattaag 51690512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 1484449 - 1484381
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaact 179  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| |  ||||||| |||| |||||||    
T  1484449 ggctgaattatattttattttgttagagggccaaaatcgcaacttccagatacttagggggccaaaact 1484381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 22347595 - 22347539
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaag 168  Q
    |||| ||||||||||||||||||||||||  |||| |||||||| ||||||||||||    
T  22347595 gctggattgtattttattttgttaggggagtaaaagcgcaacttcctaatacttaag 22347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 39411662 - 39411604
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggg 170  Q
    ||||||||||||||||||||||||||||| ||||||||  || || ||||||||||||||    
T  39411662 ggctgaattgtattttattttgttagggg-ccaaaatcctaatttcctaatacttaaggg 39411604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 83963 - 83893
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||| |||||  |||||| |||| |||||||||||||   |||||||||| |||||||    
T  83963 attgtattttattttgtaagggggtcaaaattgcaattttctaatacttagaaggtcaaaactactattaa 83893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 6940901 - 6940975
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| |||||||||||||||||||| |   |||||| |||| |||||| ||||||  |||||||||||||||||||    
T  6940901 ggctggattgtattttattttgttagagagacaaaattgcaattttctattactta--gggtcaaaactgctattaa 6940975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 31907934 - 31908003
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||   |||||||||| |||||| || ||| ||||| || |||||||||||||||    
T  31907934 ttgtattttattttgttaaatgaccaaaatcacaacttcctgatatttaagtggccaaaactgctattaa 31908003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 52575612 - 52575555
Alignment:
Q  314 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 371  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||||||||||    
T  52575612 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattaattttt 52575555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 367161 - 367196
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaac 153  Q
    |||||||||||||||||||||| |||||||||||||    
T  367161 ttgtattttattttgttagggggccaaaatcgcaac 367196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 84255 - 84332
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| |||||||||||||||||||| |  ||||||| ||||||| || |||||| |||   |||||||||||||||||    
T  84255 ggctggattgtattttattttgttagagagccaaaattgcaacttcctgatactt-aggatgcaaaactgctattaagt 84332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 7196953 - 7197023
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| |||||||   ||||||||||||||  ||| || ||||||||| ||||||||||||||    
T  7196953 ttgtagtttatttagttagggagtcaaaatcgcaacttcttaaaacataaggggtcgaaactgctattaag 7197023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 13344417 - 13344455
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  13344417 ttgtattttaattagttaggggaccaaaatcgcaacttt 13344455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 40345572 - 40345642
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||| | | |||||||||||||||| ||| || |||| || ||||| || |||||||    
T  40345572 ttgtattttattttgttatgaggccaaaatcgcaactttttaaaacataagaggccaaaattgttattaag 40345642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 39384562 - 39384639
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||||||||||| ||||| | ||||| ||||||||| || ||||||| |||  ||||||| || |||||    
T  39384562 ggctggattgtattttattttattaggaggccaaattcgcaacttcctgatacttaggggaccaaaactactgttaag 39384639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 43702718 - 43702763
Alignment:
Q  324 tattaataacttaatgttattgtatgtcaataaagtttattaattt 369  Q
    ||||||||||||||||| ||||||| |||| |||||||||| ||||    
T  43702718 tattaataacttaatgtcattgtatttcaacaaagtttattgattt 43702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 50379956 - 50380021
Alignment:
Q  116 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 181  Q
    ||||||| ||| |||| ||||||||||||||||||| |||| | | | ||| ||||||||||||||    
T  50379956 aattgtaattttttttattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 50380021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 1096529 - 1096469
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| ||||||||||||||||||||||||  || | ||||||||  ||||||| |||||||    
T  1096529 tttttttaggggaccaaaatcgcaactttggaaaagttaaggggctaaaactgttattaag 1096469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 5287826 - 5287886
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| ||||||| ||||||||||||||||   | | ||||||||| |||||||||||||||    
T  5287826 tttttttagggggccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaag 5287886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 12268208 - 12268252
Alignment:
Q  320 atcctattaataacttaatgttattgtatgtcaataaagtttatt 364  Q
    ||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  12268208 atcctattaataactcaatgtcattgtatttcaaaaaagtttatt 12268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 29219359 - 29219436
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||| ||||||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||| || |||||||||||    
T  29219359 gctggattgtatattattttgttagggggctaaaatcgcaacttcctaatacttagggggtcagaattgctattaagt 29219436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 4694989 - 4695067
Alignment:
Q  111 ggctgaattgtattttattttgtt-aggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||| | ||||||| |||| |||||||||| |||||    
T  4694989 ggctgaattgtattttattttgttaagggggccaaaatcacaactttttgatacttagggggccaaaactgcttttaag 4695067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 9498985 - 9498911
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||  |||||||||||||| || ||||||| |||| |||||||| |||||||    
T  9498985 tgaattgtattttattttgttatggggtcaaaatcgcaacttcctgatacttagggggccaaaactgttattaag 9498911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 9234715 - 9234792
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| |||||||||||| |||||||| || ||||||||||||||| || ||| ||||||| |||||||| ||||||||    
T  9234715 ggctaaattgtattttaatttgttagagggccaaaatcgcaacttcctgatatttaagggatcaaaactactattaag 9234792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 34232835 - 34232761
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| | ||||||||| ||||| |||||||||||||||    
T  34232835 ggctgaattgtattttattttattagggggccaaaattgcaac-tcctaatactt-aggggccaaaactgctattaa 34232761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 8409807 - 8409876
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||||||||||||||  ||| || | | ||||||||||||||||||||    
T  8409807 ttgtattttattttgttaggggcccaaaatcgcaacttcttaaaacat-atgggtcaaaactgctattaag 8409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 45522433 - 45522503
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| | |||||||||||||  ||| || || ||||||||||||||| |||||    
T  45522433 ttgtattttattttgttagggggctaaaatcgcaacttcttaaaacatagggggtcaaaactgcttttaag 45522503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 5899514 - 5899591
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||   || |||||||| |||||||    
T  5899514 ggctgaattgtattttattttgttatgagaccaaaattgcaactttgtgatacttagatggccaaaactgttattaag 5899591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 29919146 - 29919070
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaaa 195  Q
    ||||| |||||||||||||||| ||||||||||||  |  | ||||||| |||||||||||||||||||||| |||||    
T  29919146 ttgtaatttattttgttagggg-ccaaaatcgcaagatcgtgatacttagggggtcaaaactgctattaagtctaaaa 29919070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 29219149 - 29219086
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 180  Q
    ||||||||||||||| ||||||||| |||||| |||||| |||||||||| |||  ||||||||    
T  29219149 attgtattttattttattaggggactaaaatcacaacttcctaatacttaggggaccaaaactg 29219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 2044750 - 2044678
Alignment:
Q  114 tgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||||||| ||| || ||||||||| ||  | |||||| ||||| |||||||||||||||    
T  2044750 tgaattgtattttattttgttatggggccgaaatcgcaatttcatgatactt-aggggccaaaactgctattaa 2044678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 4461732 - 4461675
Alignment:
Q  132 gttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||||||||||||||| ||| | | || ||||||| |||||||||||||||||    
T  4461732 gttaggggaccaaaatcgcaaatttttgaaacataaggggccaaaactgctattaagt 4461675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 5899283 - 5899210
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatactta-aggggtcaaaactgctattaagt 189  Q
    ||||||||||||||||||||||  || |||||||||||| || |||||||  |||| |||||||| ||||||||    
T  5899283 attgtattttattttgttagggagccgaaatcgcaacttcctgatacttaggggggccaaaactgttattaagt 5899210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 12112091 - 12112162
Alignment:
Q  314 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaatttaataa 386  Q
    |||||| || ||||||||||| ||||| ||||||| |||| |||||||||| | |||| ||||||||||||||    
T  12112091 aaatgagtcatattaataactcaatgtcattgtatttcaaaaaagtttattca-ttttaatacaatttaataa 12112162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 18929381 - 18929305
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||||||||||||||||||||| |  ||||||| ||||||| | ||| ||||| || ||| |||||||||||    
T  18929381 ggctggattgtattttattttgttaggaggtcaaaatctcaactttttgataattaagaggccaatactgctattaa 18929305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 2802706 - 2802651
Alignment:
Q  132 gttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||| ||| |||||||||||||||  |||||| || ||||||||||||||||||||    
T  2802706 gttatgggtccaaaatcgcaacttcttaatacatagggggtcaaaactgctattaa 2802651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 9499223 - 9499270
Alignment:
Q  142 caaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||||||||  ||||||||| |||| |||||||||||||||||    
T  9499223 caaaatcgcaacttcgtaatacttagggggccaaaactgctattaagt 9499270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 7477409 - 7477371
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  7477409 ttgtattttaattagttaggggaccaaaatcgcaacttt 7477371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 14170494 - 14170424
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| |||||||  ||||||| |||||||||||||||  ||| || || |||||||||||||| ||||||    
T  14170494 ttgtagtttatttaattagggggccaaaatcgcaacttcttaaaacatagggggtcaaaactgcaattaag 14170424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 5645767 - 5645804
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  5645767 ttgtattttattttgttagggggccaaaatcacaactt 5645804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 7658826 - 7658871
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||| |||||||||| || |||||||| ||||||||||||||||    
T  7658826 ggctgatttgtattttaattagttagggggccaaaatcgcaacttt 7658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 25897062 - 25896993
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||| |||||||||||| ||||||||||||||||  || | ||| ||||  ||||||||||||||    
T  25897062 ttgtagttttttttgttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaa 25896993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 29196604 - 29196641
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  29196604 ttgtattttattttgttagaggaccataatcgcaactt 29196641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 29340840 - 29340771
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||| ||| |||||||||||| ||  | | || || |||| |||||||||||||||    
T  29340840 ttgtattttattttgttaaggggccaaaatcgcaaattatttaaacatagggggccaaaactgctattaa 29340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 3369926 - 3369849
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  | ||||||| ||||  ||||||| |||||||    
T  3369926 ggctgaattgtattttattttgttagggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaag 3369849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 30627008 - 30627085
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||||| |||  |||||||| |||||| | ||||||| ||||| |||||||||||||||    
T  30627008 ggctgaattgtattttattttgttatggggtcaaaatcgtaactttttgatacttagggggtgaaaactgctattaag 30627085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 33090527 - 33090603
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||||||||| ||||||||  || ||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  33090527 gctgaattgtattttgttttgttatagggccaaa-tcgcaactttctaatacttagggggtcaaaactactattaagt 33090603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 16323050 - 16322978
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||||||||||||||||| |||  ||||||||||||||  |||||||||||||| |||||||| ||||||||    
T  16323050 attgtattttattttgttatggggtcaaaatcgcaacttcttaatacttaaggggccaaaactgttattaagt 16322978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 49000673 - 49000598
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||||||||||||||||||||||| | ||  |||||||||||||||||||| |||| | ||||||||| |||||||    
T  49000673 ggctgaattgtattttattttgttatgagaataaaatcgcaactttctaatatttaa-gagtcaaaactactattaa 49000598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 23125839 - 23125917
Alignment:
Q  304 aaaacttattaaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaattta 382  Q
    |||| ||| ||||| |||| ||||||||||| ||||| ||||||| |||| |||||||||||||||| | |||||||||    
T  23125839 aaaagttaataaataaatcatattaataactcaatgtcattgtatttcaacaaagtttattaattttgtgtacaattta 23125917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 30626660 - 30626587
Alignment:
Q  113 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||| |||||||||| | |||||||||||| || || |||||| ||||| |||||||||||||||    
T  30626660 ctgaattgtattttcttttgttaggaggccaaaatcgcaatttcctgatactt-aggggccaaaactgctattaa 30626587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 53831224 - 53831154
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| ||||||||||||||||||||||||  ||| || || |||| ||||||||||||||||    
T  53831224 ttgtagtttatttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaactgctattaag 53831154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 11787135 - 11787065
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||| ||||| | |||||||||||||||| ||| ||| | || ||||||||||||||||    
T  11787135 attgtattttattttgtcagggggc-aaaatcgcaactttctgatatttaggagggcaaaactgctattaag 11787065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 11799302 - 11799232
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||| ||||| | |||||||||||||||| ||| ||| | || ||||||||||||||||    
T  11799302 attgtattttattttgtcagggggc-aaaatcgcaactttctgatatttaggagggcaaaactgctattaag 11799232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 54953801 - 54953732
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgct 182  Q
    ||||||||| ||||||||||||||| ||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  54953801 ggctgaattatattttattttgttatgggtc-aaaatcgcaacttcctaatactt-agggggcaaaactgct 54953732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 33122853 - 33122902
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaa 160  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| ||||    
T  33122853 ggctaaattgtattttattttgtttggggatcaaaatcgcaacttcctaa 33122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 15845162 - 15845209
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttct 158  Q
    ||||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  15845162 ggctggattgtattttattttgttagaggatcaaaatcgtaactttct 15845209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 26858416 - 26858378
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  26858416 ttgtattttaattagttaggggaccaaaatcgcaacttt 26858378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 30064074 - 30064004
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| |||| || ||||||||||||||||||||||||  ||| || || |||| ||||||| ||||||||    
T  30064074 ttgtagtttacttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaacttctattaag 30064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 45917622 - 45917584
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatactta 166  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  45917622 ttttgttaggggaccaaaattacaactttctaatactta 45917584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 48087354 - 48087297
Alignment:
Q  324 tattaataacttaatgttattgtatgtcaataaagtttattaattttttatacaattta 382  Q
    ||||||||||| ||||||||||||| |||| |||||||||| | ||| |||||||||||    
T  48087354 tattaataactcaatgttattgtatttcaacaaagtttattca-tttgtatacaattta 48087297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 229992 - 229943
Alignment:
Q  320 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 369  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  229992 atcctattaataactcaatgtcattgtatttcaacaaagtttattgattt 229943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 1096534 - 1096611
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||| ||||| |||||||||||||||| |||||||||| |  |  | ||||||| |||| ||||||||| ||||||    
T  1096534 ggctgagttgtaatttattttgttagggggccaaaatcgccaaatcatgatacttagggggccaaaactgcaattaag 1096611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 5303842 - 5303781
Alignment:
Q  119 tgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactg 180  Q
    |||| |||||||||||| |||  |||||||||||||| || ||||||| |||| ||||||||    
T  5303842 tgtaatttattttgttaaggggtcaaaatcgcaacttcctgatacttagggggacaaaactg 5303781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 9180654 - 9180719
Alignment:
Q  116 aattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgc 181  Q
    ||||||| ||| |||| ||||||| |||||||| || |||| ||| | ||||||||||||||||||    
T  9180654 aattgtaattttttttattagggggccaaaatcacacctttataaaagttaaggggtcaaaactgc 9180719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 13826280 - 13826325
Alignment:
Q  143 aaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||    
T  13826280 aaaatcgcaactttttaaaacttaaggggttaaaactgttattaag 13826325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 47742303 - 47742234
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||||||| |||||||| ||||||||||||||| || | || || | || |||||||||||||||    
T  47742303 ttgtagtttatttagttagggggccaaaatcgcaacttcctgaaacataggtggacaaaactgctattaa 47742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 47742586 - 47742655
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||||||| |||||||| | ||||||| |||||  ||| || || ||||||||||||||||||||    
T  47742586 ttgtaatttatttagttagggggctaaaatcgtaacttcttaaaacatagggggtcaaaactgctattaa 47742655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 48188326 - 48188359
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaa 144  Q
    ||||||||||||||||||||||||||||| ||||    
T  48188326 ggctgaattgtattttattttgttagggggccaa 48188359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 49804338 - 49804375
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  49804338 ttgtattttatttttttaggggatcaaaatcgcaactt 49804375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 55038232 - 55038155
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||| ||||| |||||||||||  ||||| ||||||||||  |  | ||||||| ||||||||||||| |||||||    
T  55038232 ggctgagttgtaatttattttgttcagggactaaaatcgcaagatcgtgatacttagggggtcaaaactgttattaag 55038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 23759825 - 23759885
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| |||||||||||||||||||||||| | | | ||||||||| |||| || |||||||    
T  23759825 ttttcttaggggaccaaaatcgcaactttatgaaagttaaggggttaaaattgttattaag 23759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 1894717 - 1894791
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||| || | ||||||||||||||||    
T  1894717 ggctgaattgtattttattttgttagggg-ttaaaatcgcaactttctaatactt-agagctcaaaactgctattaa 1894791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2164692 - 2164775
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 194  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  2164692 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 2164775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2176325 - 2176408
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 194  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  2176325 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 2176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 1615034 - 1615103
Alignment:
Q  112 gctgaattgtattttattttgttagggga-ccaaaatcgcaactttctaatacttaaggggtcaaaactg 180  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||  |||||||    
T  1615034 gctggattgtattttattttgttaggggggccaaaatcgcaactttctaatacttagggggctaaaactg 1615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 30369853 - 30369786
Alignment:
Q  120 gtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||| |||||||||||||  ||| || ||||||| ||||||||||||||||    
T  30369853 gtattttattttgttaggggac-aaaatcgcaacttcttaaaacataaggggccaaaactgctattaag 30369786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 12101692 - 12101751
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggg 170  Q
    ||||| ||||||||||||||||||||| | |||||||| ||||||||| |||||||||||    
T  12101692 ggctggattgtattttattttgttaggaggccaaaatcacaactttctgatacttaaggg 12101751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 2164498 - 2164422
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  2164498 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 2164422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 2176131 - 2176055
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  2176131 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 2176055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 15139642 - 15139574
Alignment:
Q  120 gtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||  || | ||||||||||||| ||| |||||| | |||||||||||||||||||    
T  15139642 gtattttattttgttaaagggcaaaaatcgcaacttcctagtacttaggaggtcaaaactgctattaag 15139574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 1614893 - 1614838
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatactta 166  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||||||    
T  1614893 ggctggattgtattttattttgttaggaggccacaatcgcaacttcctaatactta 1614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 12799034 - 12799071
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12799034 ttgtattttattttgttaggtgaccaaaatcgcaactt 12799071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 499346 - 499417
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    ||||| ||||||||||||||||||||||||||| |  |  | ||||||| | |||||||||||| |||||||    
T  499346 ttgtaatttattttgttaggggaccaaaatcgccagatcgtgatacttacgaggtcaaaactgcgattaagt 499417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 2539054 - 2538985
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| || || |||  ||||||| ||||||||    
T  2539054 ttgtattttattttgttagggg-tcaaaatcgcaactttttaaaacataggggaccaaaactactattaag 2538985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 2840861 - 2840823
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  2840861 ttgtattttttttttttaggggaccaaaatcgcaacttt 2840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 12730577 - 12730615
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  12730577 ttgtattttaattagttaggggaccaaaatcgcaacttt 12730615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 1894521 - 1894472
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatactta 166  Q
    ||||||||||||||| ||||| |||||||||| ||||||| ||| |||||    
T  1894521 attgtattttattttattaggtgaccaaaatcacaactttataaaactta 1894472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 8223982 - 8224042
Alignment:
Q  128 ttttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| |||||||| |||||||||||||||  || | ||||  |||||||||||||||||||    
T  8223982 tttttttaggggatcaaaatcgcaactttagaaaagttaataggtcaaaactgctattaag 8224042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 23993894 - 23993970
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||  ||||||||| || | |||||||||||||||    
T  23993894 ggctggattgtattttattttgttagggggccaaaattgcaacttcttaatacttagggagccaaaactgctattaa 23993970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 35125158 - 35125235
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||||||||||||||| ||||||||||||  ||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  35125158 ggctgaattgtattttcttttgttagggggtcaaaatcgctacttcctaatactt-aggggccaaaactgttattaagt 35125235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 23993801 - 23993725
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||| |||||||||||||| || |||||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  23993801 ggctggattatattttattttgtt-ggagaccaaaatcgcaactttctgatacttaggggataaaaactgctattaag 23993725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 14289344 - 14289268
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  | |||||| ||| |  |||||||||||||||    
T  14289344 ggctaaattgtattttattttgttagggggccaaaatcgcaacttcatgatactt-aggaggaaaaactgctattaag 14289268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 31226924 - 31226855
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctatta 186  Q
    |||||||||||||||||||  || |||| ||| ||||||||| ||||||| |||| ||||||||||||||    
T  31226924 attgtattttattttgttacagggccaagatctcaactttctgatacttagggggccaaaactgctatta 31226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 31227123 - 31227199
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| |||||||||||||||||||| ||  |||||||||||||| || ||| ||| | || |||||||||||||||    
T  31227123 ggctgtattgtattttattttgttagagggtcaaaatcgcaacttcctgatatttaggaggccaaaactgctattaa 31227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 9780927 - 9780997
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| ||||| ||| ||||||||||||||| ||| || ||||||| ||||||||| ||||||    
T  9780927 ttgtagtttatttagttagaggatcaaaatcgcaactttttaaaacataaggggccaaaactgcaattaag 9780997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 10522722 - 10522645
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||||  | ||||||||||    |||||||||||||||    
T  10522722 ggctgcattgtattttattttattagtggaccaaaatcacaacttcttgatacttaaggaccaaaaactgctattaag 10522645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 29370788 - 29370719
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    |||||||||||||||| |||||| ||||||||||||||  ||| || || |||| ||||||| |||||||    
T  29370788 ttgtattttattttgtcaggggatcaaaatcgcaacttcttaaaacatagggggccaaaacttctattaa 29370719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 35500333 - 35500370
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35500333 ttgtattttattttgttagggggccaaaatcgcaactt 35500370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 3198532 - 3198477
Alignment:
Q  113 ctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaag 168  Q
    ||||||| |||||||||||||||  |||| ||||| |||| |||||||||||||||    
T  3198532 ctgaattatattttattttgttaaaggactaaaattgcaagtttctaatacttaag 3198477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 13491550 - 13491481
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||||||||||||||||| |||||||  |||||  ||||| ||||||| | |||||||||||||||    
T  13491550 attgtattttattttgttagggga-caaaatcttaacttcgtaatatttaagggct-aaaactgctattaag 13491481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 14816039 - 14816109
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||| ||||||| |||||||| |||||||||||||||  | | || || |||| ||||||||||||||||    
T  14816039 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaag 14816109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 14983942 - 14984012
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||||||||| || ||||||||||||||||||||||||  ||| || || |||| ||||| ||| ||||||    
T  14983942 ttgtattttaattagttaggggaccaaaatcgcaacttcttaaaacatacggggccaaaagtgcaattaag 14984012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 35180527 - 35180565
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  35180527 ttgtattttaatttgttagggggccaaaatcgcaacttt 35180565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 37343724 - 37343686
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  37343724 ttgtattttaattagttaggggaccaaaatcgcaacttt 37343686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 16870207 - 16870264
Alignment:
Q  314 aaatgaatcctattaataacttaatgttattgtatgtcaataaagtttattaattttt 371  Q
    ||||| ||||||||||||||| | ||| ||||||| |||| |||||||||| ||||||    
T  16870207 aaatggatcctattaataactcattgtcattgtatttcaacaaagtttattgattttt 16870264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 43994418 - 43994369
Alignment:
Q  320 atcctattaataacttaatgttattgtatgtcaataaagtttattaattt 369  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  43994418 atcctattaataactcaatgtcattgtatttcaacaaagtttattgattt 43994369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 17717 - 17634
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagtataaa 194  Q
    ||||| ||||||||||||||||||||||   |||||||||||||| || ||||| | |||| |||||||||||||||| |||||    
T  17717 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagcataaa 17634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 17911 - 17987
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||||| | |||||||  || |||||||||||||||||    
T  17911 ggctgaactgtattttactttattagggg-ccaaaatcgcaactttatgatacttagaggatcaaaactgctattaag 17987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 128150 - 128226
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaa 187  Q
    ||||| |||||||||||||||| || ||| ||||||| |||||||||| |||||||  ||| |||||||||||||||    
T  128150 ggctggattgtattttattttggtaagggcccaaaattgcaactttctgatacttagagggccaaaactgctattaa 128226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 9878 - 9948
Alignment:
Q  117 attgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||| | | |||||||||||||||||||||    
T  9878 attgtattttattttattaggggtc-aaaatcgcaacttcctaatattaagggggtcaaaactgctattaag 9948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 9624 - 9580
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactt 155  Q
    ||||||||||||||||||||| || | || |||||||||||||||    
T  9624 ggctgaattgtattttattttatttgtgggccaaaatcgcaactt 9580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 37862 - 37786
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaag 188  Q
    |||| ||||||||||||||||||||||||  |||||||||||||| || ||||||| ||||  ||||||||| |||||    
T  37862 ggctaaattgtattttattttgttagggg-tcaaaatcgcaacttcctgatacttagggggctaaaactgctgttaag 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 8615 - 8581
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaa 146  Q
    |||||||||||||||||||||||||||| ||||||    
T  8615 gctgaattgtattttattttgttagggggccaaaa 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 9258 - 9224
Alignment:
Q  112 gctgaattgtattttattttgttaggggaccaaaa 146  Q
    |||||||||||||||||||||||||||| ||||||    
T  9258 gctgaattgtattttattttgttagggggccaaaa 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 63107 - 63069
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  63107 ttgtattttaattagttaggggaccaaaatcgcaacttt 63069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 63305 - 63343
Alignment:
Q  118 ttgtattttattttgttaggggaccaaaatcgcaacttt 156  Q
    |||||||||| || |||||||||||||||||||||||||    
T  63305 ttgtattttaattagttaggggaccaaaatcgcaacttt 63343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 151600 - 151677
Alignment:
Q  111 ggctgaattgtattttattttgttaggggaccaaaatcgcaactttctaatacttaaggggtcaaaactgctattaagt 189  Q
    |||||||||||||||||| |||||||||| | |||||| ||| || || ||||||| | || ||||||||| |||||||    
T  151600 ggctgaattgtattttatattgttagggggctaaaatcacaa-ttcctgatacttaggaggacaaaactgcaattaagt 151677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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