View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_1 (Length: 1054)
Name: NF3176_low_1
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 941; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 1 - 1041
Target Start/End: Complemental strand, 4368460 - 4367385
Alignment:
| Q |
1 |
tagctgtctttgaggttttggtctttgctgtcacaggttgtttcaattctcatcttcccaattttcacactcaaaaatctgcttatacttctaaagactt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4368460 |
tagctgtctttgaggttttggtctttgctgtcacaggttgtttcaattctcatcttcccaattttcacactcaaaaatctgcttatactgctaaagactt |
4368361 |
T |
|
| Q |
101 |
catacgccttgctcaagaaaccagatgtaattactcatttcaatacaatactgtttcaattct--------------atcctcagtaaaatagtaaacaa |
186 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4368360 |
catacgccttgctcaagaaaccagatgtaattactcatttcaatacaatactgtttcaattcttactttttttttttatcctcagtaaaatagtaaacaa |
4368261 |
T |
|
| Q |
187 |
tggcttagtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttactgtgattctgt---------------------agacaagttata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4368260 |
tggcttagtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttactgtgattctgtcaaattcttgtgtgattctgtagacaagttata |
4368161 |
T |
|
| Q |
266 |
tccaacaatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgcaggttaatatcataaaataatatgaaccataataattgatcacgt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368160 |
tccaacaatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgctggttaatatcataaaataatatgaaccataataattgatcacgt |
4368061 |
T |
|
| Q |
366 |
tggatacaactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtgg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368060 |
tggatacaactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtgg |
4367961 |
T |
|
| Q |
466 |
ggtttgaagccagctttgatgtggtcctatggtctattaaattatcctaactgctcaactttattgtaaagctctgaatctaatacattaaactaagttt |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367960 |
ggtttgaagccagctttgatgtggtcctatggtctattaaattatcctaactgctcaactttattgtaaagctctgaatctaatacattaaactaagttt |
4367861 |
T |
|
| Q |
566 |
ttatttttatatacttttcttcctcttcaattactattttctctccccaaattacattttaaaggggtaaacttttcaatctcaagtcaaagtgaactgt |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367860 |
ttatttttatatacttttcttcctcttcaattactattttctctcctcaaattacattttaaaggggtaaacttttcaatctcaagtcaaagtgaactgt |
4367761 |
T |
|
| Q |
666 |
tttgaagagtagagttaatgtacctctttaaaggccttgatttgtaagcttgtcctataattttatatgggatggaaactgaaatggaagttattgtgca |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4367760 |
tttgaagagtagagttaatgtacctctttaaaggccttgatttgtaagcttgtcctatagttttatatgggatggaaactgaaatggaagttattgtgca |
4367661 |
T |
|
| Q |
766 |
atactagttttgcactttgtacttgcatatgaaagtcacacatgatataacttcatttcccacaacacatttgcaacagcaatatacaatatagccttgt |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4367660 |
atactagttttgcactttgtacttgcatatgaaagtcacacatgatataacttcatttcccacaacacatttgcaacagcaatatacaatatagccttgt |
4367561 |
T |
|
| Q |
866 |
ttttaggtttcaaccacaacaccgctgctttgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgct |
965 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367560 |
ttttaggtttcaaccacaacaccgctactttgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgct |
4367461 |
T |
|
| Q |
966 |
gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatct |
1041 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4367460 |
gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatct |
4367385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 936 - 1032
Target Start/End: Complemental strand, 4017688 - 4017592
Alignment:
| Q |
936 |
ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
|||| ||||||||| || |||||||| | ||||||||||||||||| ||||| |||| |||||| | ||| |||||||| ||||| |||||||||| |
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|
| T |
4017688 |
ccggcggtcctctccgaggatctcatcgtcgaggtactttcgtttcttcccgtgaaatctcttctccaatttaggtgtgtgagtaaatcttggaaaa |
4017592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 936 - 1032
Target Start/End: Original strand, 10218126 - 10218222
Alignment:
| Q |
936 |
ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
|||| ||||||||| || |||||| |||| ||||||||||| ||||| || || |||| |||| || | ||||||||||| ||||| |||||||||| |
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|
| T |
10218126 |
ccggcggtcctctccgaagatctcgttgccgaggtactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaa |
10218222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 965 - 1032
Target Start/End: Complemental strand, 4015841 - 4015774
Alignment:
| Q |
965 |
tgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
|||||||||||| ||||| || || | || |||| |||||||||||||||| |||||||||||||||| |
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|
| T |
4015841 |
tgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaa |
4015774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 966 - 1032
Target Start/End: Complemental strand, 21897422 - 21897356
Alignment:
| Q |
966 |
gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
||||||||||||||||| || |||| || |||| |||||||||||| ||| ||||||| |||||||| |
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|
| T |
21897422 |
gaggtactttcgtttcttcctgttagatctcttattcgattcaggtctgtaagtaagtgttggaaaa |
21897356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 900 - 1032
Target Start/End: Original strand, 29105856 - 29105988
Alignment:
| Q |
900 |
atgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttc |
999 |
Q |
| |
|
|||||||| ||||| || | |||||||||| | ||| ||||||| ||| | ||||||||||| || || || ||||| || || ||||||| || ||||| |
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|
| T |
29105856 |
atgaatatacaatcggcaaagtctatggctctgtcgtcggtggttctccccgatgatctcatcgcagaagttctttccttccttcccgttatatttcttc |
29105955 |
T |
|
| Q |
1000 |
ttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| |
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|
| T |
29105956 |
ttcgatttaggtctgtcagcaagtcttggaaaa |
29105988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 934 - 1032
Target Start/End: Complemental strand, 29480466 - 29480368
Alignment:
| Q |
934 |
cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||| ||||||| || || ||||| |||| || | ||||||||| ||||||| ||||||||||||||| |
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| T |
29480466 |
cgccggtggtccttcctgatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtcttggaaaa |
29480368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 954 - 1041
Target Start/End: Complemental strand, 29923012 - 29922925
Alignment:
| Q |
954 |
gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatct |
1041 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || || ||| |||||||||||||| | |||| |||||||||||||||| ||||||| |
|
|
| T |
29923012 |
gatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatct |
29922925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 1032
Target Start/End: Original strand, 29074123 - 29074253
Alignment:
| Q |
901 |
tgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttct |
1000 |
Q |
| |
|
||||||| ||||| || | |||||||||| | ||| ||||||| || | ||||||||||| || || || ||||| || || ||| ||| || |||||| |
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|
| T |
29074123 |
tgaatatacaatcggcaaagtctatggctctgtcgtcggtggttcttcccgatgatctcatcgcagaagttctttccttccttccc-ttatatttcttct |
29074221 |
T |
|
| Q |
1001 |
tcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||| |
|
|
| T |
29074222 |
tcgatttaggtctgtcagcaagtcttggaaaa |
29074253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 978 - 1032
Target Start/End: Complemental strand, 47479721 - 47479667
Alignment:
| Q |
978 |
tttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
||||| |||||| ||| |||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
47479721 |
tttcttcccgttgaatttcttattcgattcagttgtgtaagtaagtcttggaaaa |
47479667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 938 - 1031
Target Start/End: Complemental strand, 29436595 - 29436502
Alignment:
| Q |
938 |
ggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa |
1031 |
Q |
| |
|
|||||| ||| |||| |||||||| | ||| ||||| ||||||| |||||||||| |||||| ||| || ||||||||| ||||||||||| |
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|
| T |
29436595 |
ggtggttctccctgacgatctcatcaccgagatacttccgtttcttcccgttaaatccattcttcaatttagatgtgtcagtgagtcttggaaa |
29436502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 951 - 1032
Target Start/End: Complemental strand, 29446615 - 29446534
Alignment:
| Q |
951 |
gatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa |
1032 |
Q |
| |
|
||||||||||| || ||||| |||| || || ||||| |||| |||| ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
29446615 |
gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaa |
29446534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 954 - 1031
Target Start/End: Complemental strand, 29455059 - 29454982
Alignment:
| Q |
954 |
gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa |
1031 |
Q |
| |
|
|||||||| |||||||||||||| | ||| ||||| ||| |||||||| ||||||||| || | ||||| ||||||| |
|
|
| T |
29455059 |
gatctcatcgctgaggtactttcttatcttcccgtcaaaattcttcttcaattcaggtgcgtgaataagtattggaaa |
29454982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 1031
Target Start/End: Complemental strand, 29477343 - 29477246
Alignment:
| Q |
934 |
cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa |
1031 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||| ||||||| || || ||||| |||| |||| ||||| ||| ||||| || |||||||||||| |
|
|
| T |
29477343 |
cgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaa |
29477246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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