View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_12 (Length: 461)
Name: NF3176_low_12
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 26840006 - 26840422
Alignment:
| Q |
29 |
atgaaatataaagatatacactaaaaagaaaattttcagtgatatcactacaacgtgaatagcaaagaggacctattagtactaacacatacttctttag |
128 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26840006 |
atgaaatataaagatatacactaaaatgtgaattttcagtgatatcactacaacttgaatagcaaagaggacctattagtactaacacatacttctttag |
26840105 |
T |
|
| Q |
129 |
acact--gtacatatatcatgagatccactatgacactatacttgcatcaataaacaaaaatgatactgtaattatttagacactttgtagacactatac |
226 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
26840106 |
acactctgtacatatatcatgagatccactgtgacactatacttgcaccaataaacaaaaatgatattgtaattctttagacactttgtagacactatac |
26840205 |
T |
|
| Q |
227 |
tttgcagaggttgaaaaagagaagagcaacaccgaaaaaatcagaagtgaatagtaacaaatgctcctcaattcaaacccattcacacaaacttcatgca |
326 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26840206 |
tttgcagaggttgaaaaagagaagagcagcaccgaaaaaatcagaagtgaatagtaacaaatgctcctcaattcaaacccattcacaaaaacttcatgca |
26840305 |
T |
|
| Q |
327 |
agtggccattttgtcttcaaaagctttgaattcttagcccagcactacacttacaaacagttcctctagtttgaaatatggagttttctagccctgcact |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26840306 |
agtggccattttgtcttcaaaagctttgaattcttagcccagaactacactgacaaacagttcctctagtttgaaatatggagttttctagccctgcact |
26840405 |
T |
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| Q |
427 |
acaaagaaaaatggttc |
443 |
Q |
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| T |
26840406 |
acaaagaaaaatggttc |
26840422 |
T |
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Back To:
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Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 50975104 - 50975266
Alignment:
| Q |
31 |
gaaatataaagatatacactaaaaagaaaattttcagtgatatcactacaacgtgaatagcaaagaggacctattagtactaacacatacttctttagac |
130 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975104 |
gaaatataaagatatacac--aaaagaaaatttccagtgatatcactacaacgtgaatagcaaagaggacctattagtactaacacatacttctttagac |
50975201 |
T |
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| Q |
131 |
a--ctgtacatatatcatgagatccactatgacactatacttgcatcaataaacaaaaatgatac |
193 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50975202 |
actctgcacatatatcatgagatccactatgacactatacttgcaccaataaacaaaaatgatac |
50975266 |
T |
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