View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_13 (Length: 461)
Name: NF3176_low_13
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 31407748 - 31408194
Alignment:
| Q |
1 |
cccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttcaagatgcgtggccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407748 |
cccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttcaagatgcgtggccaa |
31407847 |
T |
|
| Q |
101 |
aaggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagccaaagagggaggtggctttgaaacgggaatcaccagagccttc-- |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31407848 |
aaggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagtcaaagaggaaggtggctttgaaacgggaatcaccagagccttctt |
31407947 |
T |
|
| Q |
199 |
-ttcatcggaagatagttgtgagtcatcgtcaccaggatcgaagaggaggagcatggttgacctacttaacaaattagccaagaatagaagccaagtcat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407948 |
cttcatcggaagatagttgtgagtcatcgtcaccaggatcgaagaggaggagcatggttgacctacttaacaaattagccaagaatagaagccaagtcat |
31408047 |
T |
|
| Q |
298 |
ggtggtagaaaatgaaatgacctcactagaaaatgatgttgagcaatgggtgaatgagttgagtgattgctccctaatatggcgctcttaattgtcgtag |
397 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
31408048 |
ggtggtagaaaatgaaatggcctcactagaaaatgatgttgagcaatgggtgaatgagttgagtgattgctccctaatatggtgctcttaattatcgtag |
31408147 |
T |
|
| Q |
398 |
ctatgtttattttaatttttctatttatgcagctcctaagttattta |
444 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31408148 |
ctatgtttattttaatttttctatttctgcagctcctaagttattta |
31408194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 31410926 - 31411305
Alignment:
| Q |
2 |
ccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttcaagatgcgtggccaaa |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||| || |
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| T |
31410926 |
ccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaagatgcgtggccgaa |
31411025 |
T |
|
| Q |
102 |
aggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagccaaagagggaggtggctttgaaacgggaatcaccagagccttcttc |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | | |||||| ||| |||||||| |||||||||||||||||| ||||||||||| |
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| T |
31411026 |
aggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatcaccggagccttcttc |
31411125 |
T |
|
| Q |
202 |
atcggaagatagttgtgagtcatcgtcaccaggatcgaagaggagga---gcatggttgacctacttaacaaattagccaagaatagaagccaagtcatg |
298 |
Q |
| |
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|||||| || ||||||||||||||||||||| | | |||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| | | |
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|
| T |
31411126 |
atcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaagaatagatgccaagctaag |
31411225 |
T |
|
| Q |
299 |
gtggtagaaaatgaaatg---acctcactagaaaatgatgttgagcaatgggtgaatgagttgagtgattgctccctaat |
375 |
Q |
| |
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||||| |||| ||||| | | |||| | |||||| ||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
31411226 |
gtggttgaaattgaaacggcatcatcacatgctaatgattttgagcaatgggtgaatgagttgagtgatagctctctaat |
31411305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 2 - 367
Target Start/End: Original strand, 31414887 - 31415264
Alignment:
| Q |
2 |
ccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttcaagatgcgtggccaaa |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||| |||| || |
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| T |
31414887 |
ccaaaaaagaatggtgctagagtttggcttggaacgtatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaagatgcgaggccgaa |
31414986 |
T |
|
| Q |
102 |
aggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagccaaagagggaggtggctttgaaacgggaatcaccagagc------c |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||| ||||||| |||||||||| |||| | |
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|
| T |
31414987 |
aggccaagcttaattttccccacctcattggctctgatgtgtctacatctgagccagagagggaggtggttttgaaaagggaatcacccgagccttcttc |
31415086 |
T |
|
| Q |
196 |
ttcttcatcggaagatagttgtgagtcatcgtcaccaggatcgaagaggagga---gcatggttgacctacttaacaaattagccaagaatagaagccaa |
292 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31415087 |
ttcttcatcggagggaagttgtgagtcagtgtcaccagggttgaagaggaggaggggcatggttgacctacttaacaaattagccaagaatagaagccaa |
31415186 |
T |
|
| Q |
293 |
gt---catggtggtagaaaatgaaatgacctcactagaaaatgatgttgagcaatgggtgaatgagttgagtgattgc |
367 |
Q |
| |
|
|| || |||||| | ||||| | |||||| || ||||||| ||||||| |||||||||||||||| ||||||| |
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|
| T |
31415187 |
gtagccacggtggttggcgttgaaaaggcctcacaagcaaatgattttgagcagtgggtgaatgagttgaatgattgc |
31415264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 1008608 - 1008742
Alignment:
| Q |
2 |
ccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttcaagatgcgtggccaaa |
101 |
Q |
| |
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||||| |||||||| ||||| ||||||||||| || || | ||||| || ||||| ||||| ||||| |||| ||| |||||||||| ||||| || |
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| T |
1008608 |
ccaaagaagaatggagctagagtttggcttggaacgtacgaaactgaagaagaagctggtttggcttatgatagagccactttcaagatccgtggtagaa |
1008707 |
T |
|
| Q |
102 |
aggccaagcttaattttccccacctcattggctct |
136 |
Q |
| |
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| |||||||| |||||||||||||| || |||||| |
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|
| T |
1008708 |
aagccaagctcaattttccccaccttatcggctct |
1008742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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