View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_low_15 (Length: 445)

Name: NF3176_low_15
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_low_15
NF3176_low_15
[»] chr1 (8 HSPs)
chr1 (11-428)||(50912376-50912789)
chr1 (11-141)||(38138016-38138143)
chr1 (85-143)||(40034847-40034905)
chr1 (48-138)||(43045031-43045121)
chr1 (48-138)||(43066870-43066960)
chr1 (48-138)||(43083875-43083965)
chr1 (85-136)||(7891113-7891164)
chr1 (48-138)||(3300765-3300855)
[»] chr8 (3 HSPs)
chr8 (85-136)||(1846557-1846608)
chr8 (85-143)||(4619757-4619815)
chr8 (95-143)||(4297560-4297608)
[»] chr4 (1 HSPs)
chr4 (85-138)||(4231533-4231586)
[»] chr2 (2 HSPs)
chr2 (93-137)||(34690922-34690966)
chr2 (93-137)||(34713334-34713378)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 50912376 - 50912789
Alignment:
Q  11 cagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttgga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50912376 cagagatgggaataaacggaatttcatctagattatcatagccaaccctctttagaaagggtgaaaggatcttaacaatttcttcatacctacccttgga 50912475  T
Q  111 gtatttgggagtagtagcatccatctgtcaagaaatatcatacgaattataaaaataattaaatgagaaatgctagccatgccatctcatcgcacttttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50912476 gtatttgggagtagtagcatccatctgtcaagaaatatcatacgaattataaaaataattaaatgagaaatgctagccatgccatctcatcacacttttt 50912575  T
Q  211 aacacactctaatcataattagccagtcatccacttattttagttaactcatttaccggaaaccagaagtaaaatttgcaaaacaatttatttaacannn 310  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  50912576 aacacactctaatcataattagccagtcatccacttatt----ttaactcatttaccggaaaccagaagtaaaatttgcaaaacaatttatttaacattt 50912671  T
Q  311 nnnnnaataatttgactgcaacttgtcgttgtccagtcatccaacgctggctttgagtaaataactttgtccatggatatatgttttcttgattcatctt 410  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912672 tttttaataatttgactgcaacttgtcgttgtccagtcatccaacgctggctttgagtaaataactttgtccatggatatatgttttcttgattcatctt 50912771  T
Q  411 gctctgtttccttccaac 428  Q
    ||||||||||||||||||    
T  50912772 gctctgtttccttccaac 50912789  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 38138143 - 38138016
Alignment:
Q  11 cagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttgga 110  Q
    |||||||||||| ||| |||||||||||||| ||||   ||||||| |   | | |||||||||||    ||| |||||||||||||||||| |||||||    
T  38138143 cagagatgggaacaaatggaatttcatctaggttat---agccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttgga 38138047  T
Q  111 gtatttgggagtagtagcatccatctgtcaa 141  Q
    ||||||||| ||||| |||||||||||||||    
T  38138046 gtatttgggtgtagtggcatccatctgtcaa 38138016  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 40034905 - 40034847
Alignment:
Q  85 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaaga 143  Q
    |||| ||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||    
T  40034905 acaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgtcaaga 40034847  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 43045031 - 43045121
Alignment:
Q  48 atagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 138  Q
    ||||||||||||||| | | ||| |||||    ||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  43045031 atagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgt 43045121  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 43066960 - 43066870
Alignment:
Q  48 atagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 138  Q
    ||||||||||||||| | | ||| |||||    ||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  43066960 atagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgt 43066870  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 43083875 - 43083965
Alignment:
Q  48 atagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 138  Q
    ||||||||||||||| | | ||| |||||    ||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  43083875 atagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgt 43083965  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 7891164 - 7891113
Alignment:
Q  85 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatct 136  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  7891164 acaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 7891113  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 3300765 - 3300855
Alignment:
Q  48 atagccaaccttctttagaaagggtgaaaggatcttgacaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 138  Q
    ||||||||||||||| | | ||| |||||    ||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||    
T  3300765 atagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 3300855  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 1846557 - 1846608
Alignment:
Q  85 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatct 136  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  1846557 acaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 1846608  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 4619757 - 4619815
Alignment:
Q  85 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaaga 143  Q
    |||| |||||||||||||  ||||||||||||||| | ||| |||||||||| ||||||    
T  4619757 acaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaaga 4619815  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 4297560 - 4297608
Alignment:
Q  95 catacctacccttggagtatttgggagtagtagcatccatctgtcaaga 143  Q
    |||||||| || ||||||||||||| ||||| |||||||||||| ||||    
T  4297560 catacctatccatggagtatttgggtgtagtggcatccatctgtgaaga 4297608  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 4231533 - 4231586
Alignment:
Q  85 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 138  Q
    |||||||| |||||||| | ||||||||| ||||||||||| || |||||||||    
T  4231533 acaatttcatcatacctgctcttggagtacttgggagtagtggcgtccatctgt 4231586  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 34690922 - 34690966
Alignment:
Q  93 ttcatacctacccttggagtatttgggagtagtagcatccatctg 137  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||    
T  34690922 ttcatacctatccttggagtatttgggtgtaatggcatccatctg 34690966  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 34713334 - 34713378
Alignment:
Q  93 ttcatacctacccttggagtatttgggagtagtagcatccatctg 137  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||    
T  34713334 ttcatacctatccttggagtatttgggtgtaatggcatccatctg 34713378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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