View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_17 (Length: 438)
Name: NF3176_low_17
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 24211322 - 24211740
Alignment:
| Q |
14 |
atttggaagtcctacaaggaagaaggatccttcgacggtttttgttgccggtgctactggtcaagctggtatccgcattgcacagactttgcttagagaa |
113 |
Q |
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| T |
24211322 |
atttggaagtcctacaaggaagaaggatccttcgacggtttttgttgccggtgctactggtcaagctggtatccgcattgcacagactttgcttagagaa |
24211421 |
T |
|
| Q |
114 |
gggtttagtgttagagctggtgttcctgaacttggttctgctcaggaattggctcgtcttgcttctcaatataaggtaatttaatttaacttcttaatca |
213 |
Q |
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| T |
24211422 |
gggtttagtgttagagctggtgttcctgaacttggttctgctcaggaattggctcgtcttgcttctcaatataaggtaatttaatttaacttcttaatca |
24211521 |
T |
|
| Q |
214 |
accattaatttggattattaatgatcaagattcaaaaagatgttccatactatctagtatcaatggcgtgtgtccggtgtctgacatgtgtttgacacga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24211522 |
accattaatttggattattaatgatcaagattcaaaaagatgttccatactatctagtatcaatggcgtgtgtccggtgtctgacatgtgtttgacacga |
24211621 |
T |
|
| Q |
314 |
tatctgatatctcgacacatgtagttagaatttaatcactgacattttctttggttgcatgtttgtgtctagtatcgtatctggccttcatgtttatgtc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24211622 |
tatctgatatctcgacacatgtagttagaatttaatcactgacattttctttggttgcatgtttgtgtctagtatcgtatctggccttcatgtttatgtc |
24211721 |
T |
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| Q |
414 |
attgcttgatttcatctct |
432 |
Q |
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||||||||||||||||||| |
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| T |
24211722 |
attgcttgatttcatctct |
24211740 |
T |
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