View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_18 (Length: 437)
Name: NF3176_low_18
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 39803171 - 39803578
Alignment:
| Q |
18 |
aatgagacaaacaaaacaacaaggataagaaaaatgaattgaaatctcatgatgtttaatttgtgttgtaattgttatattcttaaccttcgcagacaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39803171 |
aatgagacaaacaaaacaacaaggataagaaaaatgaattgaaatctcatgatgttt-----gtgttgtaattgttatattcttaaccttcgcagacaga |
39803265 |
T |
|
| Q |
118 |
ttatgtgggattgagtaagccttagtcagttaggttgttatatatatagcacacaaagttatatcaagtgtgcagnnnnnnn-gttaatagtataaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39803266 |
ttatgtgggattgagtaagccttagtcagttaggttgttatatatatagcacacaaagttatatcaagtgtgcagttttttttgttaatagtataaataa |
39803365 |
T |
|
| Q |
217 |
atataattaaatcaaatctannnnnnnactcaacctaagtcaaactatgatatacggtattaaataaaattacacttaaatttttgaccaaaaagttttt |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39803366 |
atataattaaatcaaatctatttttttactcaacctaagtcaaactatgatatacggtattaaataagattacacttaaatttttgaccaaaaagttttt |
39803465 |
T |
|
| Q |
317 |
gaccaaaaagaatacatataagttgaatattattcattaaattatcaaaatgtattatctattactc-ttttttatctatatttgactaaaattgtttta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39803466 |
gaccaaaaagaatacatataagttgaatattattcattaaattatcaaaatgtattatctattactctttttttatctatatttgactaaaattgtttta |
39803565 |
T |
|
| Q |
416 |
agttggtgatatt |
428 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39803566 |
agttggtgatatt |
39803578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 39783550 - 39783586
Alignment:
| Q |
129 |
tgagtaagccttagtcagttaggttgttatatatata |
165 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
39783550 |
tgagtaagccttggtcagtttggttgttatatatata |
39783586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 34657369 - 34657425
Alignment:
| Q |
129 |
tgagtaagccttagtcagttaggttgttatatatatagcacacaaagttatatcaagt |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
34657369 |
tgagtaagccttagttggttaggttgttatatttatagcacacaaa-ttatatcaagt |
34657425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 10326264 - 10326218
Alignment:
| Q |
128 |
ttgagtaagccttagtcagttaggttgttatatatatagcacacaaa |
174 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10326264 |
ttgagtatgccttagtcagattggttgttatatatatagcacacaaa |
10326218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 10332778 - 10332724
Alignment:
| Q |
128 |
ttgagtaagccttagtcagttaggttgttatatatatagcacacaaagttatatca |
183 |
Q |
| |
|
||||||| ||||||||||| | | ||||||||||||||||||||||| |||||||| |
|
|
| T |
10332778 |
ttgagtatgccttagtcagattgattgttatatatatagcacacaaa-ttatatca |
10332724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 10329544 - 10329500
Alignment:
| Q |
138 |
cttagtcagttaggttgttatatatatagcacacaaagttatatca |
183 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10329544 |
cttagtcagattggttgttatatatatagcacacaaa-ttatatca |
10329500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 7823184 - 7823235
Alignment:
| Q |
20 |
tgagacaaacaaaacaacaaggataagaaaaatgaattgaaatctcatgatg |
71 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
7823184 |
tgaggcaaacaaaacaacaagaataagaaaaagagattgaaatctcatgatg |
7823235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University