View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_19 (Length: 416)
Name: NF3176_low_19
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 399
Target Start/End: Original strand, 31798298 - 31798692
Alignment:
| Q |
2 |
ccttaagtaagatctcatattcgaactttgtagatgaaaa-aatatgattatgtgagaagatttcatttaagttatattaccaaagttttagggatgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31798298 |
ccttaagtaagatctcatattcgaactttgtagatgaaaaaaatatgattatgtgagaagacttcatttaagttatattaccaaagttttagggatgctt |
31798397 |
T |
|
| Q |
101 |
taccaaagttgcattacattggttcgcgtgaaacttaacttaaacctcttaagtaagatctcaaattcgaactttgtggatggaaaaaacattattatgt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
31798398 |
taccaaagttacattacattggttcgcgtgaaacttaacttaaatcccttaagtaagatctcaaattggaactttgtggatggaaaaaatattattatgt |
31798497 |
T |
|
| Q |
201 |
aacattaaagatgatcagccggattctcgaacaaaaattaaccataaacaaaattattggatacgttacaccaatgattnnnnnnncattttaaaaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31798498 |
aacattaaagatgatcagccggattctcgaacaaaagttagccataaacaaaattattggatacgttacaccaatgattaaaaaaacattttaaaaatga |
31798597 |
T |
|
| Q |
301 |
tctaccctcttcattgcaaataacaatagcatcaaaatagtgtgtcctttgttataaataaaataaaacaaaactagattgcaagtcacatggtgagtg |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31798598 |
tctaccttcttcattgcaaataacaatagcatcaaaataacgtgtcctttgtt----ataaaataaaacaaaactagattgcaagtcacatggtgagtg |
31798692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31798443 - 31798497
Alignment:
| Q |
1 |
cccttaagtaagatctcatattcgaactttgtagat-gaaaaaatatgattatgt |
54 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||| |||||||||| ||||||| |
|
|
| T |
31798443 |
cccttaagtaagatctcaaattggaactttgtggatggaaaaaatattattatgt |
31798497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University