View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_20 (Length: 398)
Name: NF3176_low_20
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_20 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 32175485 - 32175093
Alignment:
| Q |
1 |
ggtaggcaaatctgaggatcataaagagattgcattcaag-----------tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaacta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175485 |
ggtaggcaaatctgaggatcataaagagattgcattcaatattgatagaaatgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaacta |
32175386 |
T |
|
| Q |
90 |
atttgcatacaagtggactcttcgcggattcgaagttatgataatgactcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacaca |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175385 |
atttgcatacaagtggactcttcgcggattcgaagttatgataatgactcagccgagtcagaattaagatcatatgagctaagttttcacaataaacaca |
32175286 |
T |
|
| Q |
190 |
aaaacaagatcattgattcatattttccttatgtgatggagatagctaaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175285 |
aaaacaagatcattgattcatattttccttatgtgatggagatagctaaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatga |
32175186 |
T |
|
| Q |
290 |
tgactatgatggaaccattcgttggaatcaggaacctgttaagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175185 |
tgactatgatggaaccattcgttggaatcaggaacctgttaagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
32175093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 41 - 375
Target Start/End: Complemental strand, 32119791 - 32119451
Alignment:
| Q |
41 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagtta---tgataatgac |
137 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||| | | |
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|
| T |
32119791 |
tgaagaagtgagtgatgtttttgaaggtattagtgtaaagtggaaactaatttgcatacaggtagacaagtcgcggattcgaagttacagtgatgactcc |
32119692 |
T |
|
| Q |
138 |
tcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
237 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||||| |||||||| |||||||| | ||||||||||| ||||||||||| |||||||||| |
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|
| T |
32119691 |
tcagccgtgtcagaaataagatcctatgagctaacttttcacaagaaacacaagaacaagattttcgattcatatttgccttatgtgattgagatagcta |
32119592 |
T |
|
| Q |
238 |
aacaaattaaacaaggaaacacggcaatcaagattcactca---attgaatatgatgactatg-atggaaccattcgttggaatcaggaacctgttaagt |
333 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||||| |||| | ||||||||||||||||| || || | | ||||||||| ||||||||||||| |
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|
| T |
32119591 |
atcaaatgaaacaaggaaacatggcaatcaagattcgctcaaataatgaatatgatgactatgaatataaata-tgtttggaatcacgaacctgttaagt |
32119493 |
T |
|
| Q |
334 |
tcaaccatccaatgagtttcaacactcttgcgattgatgaag |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32119492 |
tcaaccatccaatgagtttcaacactcttgcaattgatgaag |
32119451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 32183455 - 32183205
Alignment:
| Q |
41 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
140 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
32183455 |
tgaagaagtgagtgatgttttcgaaggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcc |
32183356 |
T |
|
| Q |
141 |
---gccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
237 |
Q |
| |
|
|| ||||||||| ||||||| |||||||| | ||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
32183355 |
tcggctgtgtcagaaataagatcctatgagctgacttttcacaagaagcacaaagacaagatcattgattcatatttgccttatgtgatggagatagcta |
32183256 |
T |
|
| Q |
238 |
aacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatg |
288 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
32183255 |
aacaaattaaacaaggagacatggcaaacaagattcactcaaatgaatatg |
32183205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 32159205 - 32158905
Alignment:
| Q |
1 |
ggtaggcaaatctgaggatcataaagagattgcattcaag-----------tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaacta |
89 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32159205 |
ggtaagcaaatctgaggatcataaagagcttgcattcaatattgatagaaatgaagaagtgagtgatgtttttgaaggtgttagtgtaaagtggaaacta |
32159106 |
T |
|
| Q |
90 |
atttgcatacaagtggactcttcgcggattcgaagttatgataatga---ctcagccgtgtcagaattaagatcatatgagctaagttttcacaataaac |
186 |
Q |
| |
|
|| || |||||||| ||||| || | ||| || ||| |||||||| |||| ||||||||||| ||||||| |||||||||| ||||||||| || | |
|
|
| T |
32159105 |
atatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgtcagaaataagatcctatgagctaacttttcacaagaagc |
32159006 |
T |
|
| Q |
187 |
acaaaaacaagatcattgattcatattttccttatgtgatggagatagctaaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaata |
286 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||| |||||| |
|
|
| T |
32159005 |
acaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaaacaaggagacatggcaatcaagatttactcaaatgaata |
32158906 |
T |
|
| Q |
287 |
t |
287 |
Q |
| |
|
| |
|
|
| T |
32158905 |
t |
32158905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 255
Target Start/End: Complemental strand, 32111748 - 32111531
Alignment:
| Q |
41 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
140 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| || | ||||| || ||||| | ||| |
|
|
| T |
32111748 |
tgaagaagtgagtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttcgacattttgataggggctcc |
32111649 |
T |
|
| Q |
141 |
--gcc-gtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
237 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32111648 |
tcgcctgtgtcagaaataagatcatatgagctaacttttcacaagaaacacaaaaacaagatcattgattcatatttgccttatgtgatggagatagcta |
32111549 |
T |
|
| Q |
238 |
aacaaattaaacaaggaa |
255 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32111548 |
aacaaattaaacaaggaa |
32111531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 40 - 382
Target Start/End: Original strand, 32205404 - 32205731
Alignment:
| Q |
40 |
gtgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgata---atga |
136 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||| |||||||||||| |||| |||||||||| || || || |||||| | |||||| | | |
|
|
| T |
32205404 |
gtgaagaagtgagtgatgattttgaaggtattagagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacgc |
32205503 |
T |
|
| Q |
137 |
ctcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagct |
236 |
Q |
| |
|
|||| || |||||||| | ||||| ||||| |||| ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
32205504 |
ctcatccatgtcagaaattagatcctatgaactaacttttcacaagaaacacaagaacaagatcatcgattcatatttgccttatgtgatggagatggct |
32205603 |
T |
|
| Q |
237 |
aaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatgatgactatgatggaaccattcgttggaatcaggaacctgttaagttca |
336 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||||||||||||| ||||||||| | | |||| ||| |||||||| ||||||| |
|
|
| T |
32205604 |
aaacaaattaaagaagcaaacatggctatcaagattcactcaa---------atgactatg---------gttgctggagtcatgaacctgtcaagttca |
32205685 |
T |
|
| Q |
337 |
accatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32205686 |
accatccaatgagtttcaacactcttgcaattgatgaagagcttca |
32205731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 284
Target Start/End: Original strand, 32211125 - 32211372
Alignment:
| Q |
40 |
gtgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgac-- |
137 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| |||||||||||| |||| |||||||||| || || || |||||| | |||||| || |
|
|
| T |
32211125 |
gtgaagaagtgagtgatgattttgaaggtattacagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacac |
32211224 |
T |
|
| Q |
138 |
-tcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagct |
236 |
Q |
| |
|
||| ||||||||||| | ||||| ||||| |||| ||||||||| |||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
32211225 |
ctcatccgtgtcagaaattagatcctatgaactaacttttcacaagaaacacaagaacacgatcttcgattcatatttcccttatgtgatggagatagct |
32211324 |
T |
|
| Q |
237 |
aaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaa |
284 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
32211325 |
aaacaaattaaacaaggaaacatggctatcaagattctctcaactgaa |
32211372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32178615 - 32178495
Alignment:
| Q |
1 |
ggtaggcaaatctgaggatcataaagagattgcattcaag-----------tgaagaagtgagtgatgtttttgga-ggtgttagtgtaaagtggaaact |
88 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32178615 |
ggtacgcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaagtggaaact |
32178516 |
T |
|
| Q |
89 |
aatttgcatacaagtggactc |
109 |
Q |
| |
|
||| || |||||||| ||||| |
|
|
| T |
32178515 |
aatatgtatacaagtcgactc |
32178495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 32111476 - 32111422
Alignment:
| Q |
328 |
ttaagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
32111476 |
ttaagttcaaccatccaatgagtttcaccactcttgcaattgatgaagagcttca |
32111422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 32211391 - 32211441
Alignment:
| Q |
321 |
gaacctgttaagttcaaccatccaatgagtttcaacactcttgcgattgat |
371 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32211391 |
gaacctgtcaagttcaaccatccaatgagtttcaacactcttgcaattgat |
32211441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 32157469 - 32157416
Alignment:
| Q |
329 |
taagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32157469 |
taagttcaaccatccaatgactttcaacactcttgcaattgatgaagagcttca |
32157416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 32183184 - 32183132
Alignment:
| Q |
330 |
aagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32183184 |
aagttcaatcatccaatgagtttcaacactcttgcaattgatgaagaacttca |
32183132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 32158886 - 32158834
Alignment:
| Q |
330 |
aagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttca |
382 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
32158886 |
aagtttaatcatccaatgagtttcgacactcttgcaattgatgaagagcttca |
32158834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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