View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_23 (Length: 319)
Name: NF3176_low_23
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 1037716 - 1037992
Alignment:
| Q |
20 |
aagactctttttgagaaatttcttgttgaaccttttgaggtgtagattcttgtgtggcttcttgtgaagttgaagtctcatgataagtctctcctttgct |
119 |
Q |
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| T |
1037716 |
aagactctttttgagaaatttcttgttgaaccttttgaggtgtagattcttgtgtggcttcttgtgaagttgaagtctcatgataagtctctcctttgct |
1037815 |
T |
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| Q |
120 |
atcaacttttgcaacttgatctttttgagagttttcttcttgaacttcttgaggcatagtcactttttgagcatcttctttactttcaacatttgattta |
219 |
Q |
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| T |
1037816 |
atcaacttttgtaacttgatctttttgagaattttcttcttgaactttttgaggcatagtcactttttgagcatcttctttactttcaacatttgattta |
1037915 |
T |
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| Q |
220 |
ggatcttgatcagaagtgttttgttgatccttttgatcatttacctcctcagctttattattattttcttgagttgg |
296 |
Q |
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| T |
1037916 |
ggatcttgatcagaagtgttttgttgatccttttgatcatttacctcctcagctttattattattttcttgagttgg |
1037992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 1037548 - 1037588
Alignment:
| Q |
20 |
aagactctttttgagaaatttcttgttgaaccttttgaggt |
60 |
Q |
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| T |
1037548 |
aagactctttttgagaaatttcttcttgatccttctgaggt |
1037588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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