View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_29 (Length: 293)
Name: NF3176_low_29
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 37247 - 36973
Alignment:
| Q |
1 |
aagtgcaagcagatgcataccaacttttactaccattttaactagacaaaagatgcaaataaagcaatgtgtgtcataactatatgcactcatttcatca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37247 |
aagtgcaagcagatgcataccaagttttactaccattttaactagacaaaagatgcaaataaagaaatgtgtgtcataactatatgcactcatttcatca |
37148 |
T |
|
| Q |
101 |
aattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctcatttcttcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147 |
aattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctcatttcttcttca |
37048 |
T |
|
| Q |
201 |
gttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaatt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37047 |
gttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaatt |
36973 |
T |
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