View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_3 (Length: 805)
Name: NF3176_low_3
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 424 - 788
Target Start/End: Complemental strand, 49487163 - 49486803
Alignment:
| Q |
424 |
gtactccggatgaaataggatatctactacaataagaatagtattcctccaattgatgaatgacttgttttgttgcttgccacgtctagtacagtatatg |
523 |
Q |
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| T |
49487163 |
gtactccggatgaaatagaatatctactacaataagaatagtattcctccaattgatgaatgacttgtt-----gcttgccacgtctagtacagtatatg |
49487069 |
T |
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| Q |
524 |
tttgacttggtctatgtgccttcgggtcttggtcttttttgttctcagttctattttcttgagaacttcttttgatgaattccaaactccaacacgatat |
623 |
Q |
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| T |
49487068 |
tttgacttggtctatgtgccttcgggtcttggtcttttttgttctcagttctattttcttgagaacttcttttgatgaattccaaactccaacacgatat |
49486969 |
T |
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| Q |
624 |
aatta-tacatgatgtttcattcataaaatagtagtggaagctaattaatcgcagtttacaaatcagaagacacgtcaagaaacatagcatgaacaacat |
722 |
Q |
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| T |
49486968 |
aattaatacatgatgtttcattcataaaatagtagtggaagctaattaatcgcagtttacaaatcagaagacacgtcaagaaacatagcatgaacagcat |
49486869 |
T |
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| Q |
723 |
gggcagtaggtatgaatacacagcaactttccttctcttgtttttgttttactgtcctatggtatt |
788 |
Q |
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| T |
49486868 |
gggcagtaggtatgaatacacagcaactttccttctcttgtttttgttttactgtcctatggtatt |
49486803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 187 - 425
Target Start/End: Complemental strand, 49487431 - 49487185
Alignment:
| Q |
187 |
cattttggtttgatcagtcaactctctgaattttatactctgcatgccttttaa----ttcacataatgaaaggttgcaaaagaatcattaattgttagt |
282 |
Q |
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| T |
49487431 |
cattttggtttgatcagtcaactctctgaattttatactctgcatgccttttaaataattcacataatgaaaggttgcaaaagaattattaattgttagt |
49487332 |
T |
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| Q |
283 |
atgttacacacagactaggctactatggattagtcaacaaaaggggactaacataaccacttccacaagaaattggaaatttggggaagcacccaaaggc |
382 |
Q |
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| T |
49487331 |
atgttacacacagactaggctactgtggattagtcaacaaaaggggactaacataaccacttccacaagaaattggaaatttggggaagcacccaaaggc |
49487232 |
T |
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| Q |
383 |
ag----agtggattatcgtctatcttcattccgagatttttggaagt |
425 |
Q |
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| T |
49487231 |
agagtgagtggattatcgtctatcttcattccgagatttttggaagt |
49487185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 49487537 - 49487429
Alignment:
| Q |
20 |
aaagacacgtcgattctgctaatgtnnnnnnncacagtattctcgttttagtgaatagccaaggccattgaatactgccagaagcataccttgagttgag |
119 |
Q |
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| T |
49487537 |
aaagacacgtcgatactgctaatgtaaaaaa-cacagtattctcgttttagtgaatagccaaggccattgaatactgcgagaagcataacttgagttgag |
49487439 |
T |
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| Q |
120 |
tttatttcat |
129 |
Q |
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| T |
49487438 |
tttatttcat |
49487429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 798
Target Start/End: Complemental strand, 43340728 - 43340663
Alignment:
| Q |
730 |
aggtatgaatacacagcaactttccttctcttgtttttgttttactgtcctatggtattgtctgtgctg |
798 |
Q |
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||||||||||||||| | ||||| || |||||||||||||| |||||||||||| |||||| ||||| |
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| T |
43340728 |
aggtatgaatacacaaccactttactactcttgtttttgtt---ctgtcctatggttttgtctttgctg |
43340663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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