View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_32 (Length: 281)
Name: NF3176_low_32
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30430288 - 30430551
Alignment:
| Q |
1 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggtaagattaatatttatatca |
100 |
Q |
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| T |
30430288 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcaattatgacaaaagtttacatccctggatggaggtaagattaatatttatatca |
30430387 |
T |
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| Q |
101 |
caagttgaatttgaaaaagctatattttggataaaactaagcactagattatagtgatacagtaaatggatatttggctcctctaaaattaagttaaaat |
200 |
Q |
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| T |
30430388 |
caagttgaattagaaaaagctatattttggataaaactaagcactagattatagtgatacagtaaatggaaatttggatcctctaaaattaagttaaaat |
30430487 |
T |
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| Q |
201 |
gaagtaagaataccaaaagataatatttcaacgcatgtcacatggtttgttatacttgtgcttg |
264 |
Q |
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| T |
30430488 |
aaagtaagaaaaccaaaaaaaaatatttcaacgcatgtcacatggtttgttatacttgtgcttg |
30430551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30424255 - 30424518
Alignment:
| Q |
1 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggtaagattaatatttatatca |
100 |
Q |
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| T |
30424255 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcagttatgacgaaagtttacatccctggatggaggtaagattaatatttatatca |
30424354 |
T |
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| Q |
101 |
caagttgaatttgaaaaagctatattttggataaaactaagcactagattatagtgatacagtaaatggatatttggctcctctaaaattaagttaaaat |
200 |
Q |
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| T |
30424355 |
caagttgaattcgaaaatgctatattttggataaaactaagcactagattctagtgatacagtaaatggagatttggctcctctaaaattaagttaaaat |
30424454 |
T |
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| Q |
201 |
gaagtaagaataccaaaagataatatttcaacgcatgtcacatggtttgttatacttgtgcttg |
264 |
Q |
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| T |
30424455 |
aaagtaagaagaccagaataaaatatttcaacgcatgtcacatggtttgttatacttgtgcttg |
30424518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 30468248 - 30468364
Alignment:
| Q |
1 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggtaagattaatatttatatca |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
30468248 |
aaagaatatttcaacttcaaaccgaacaagctgaacttacaactaaaattatgatgaaagtttatatccctggatggaggtaagattaggttttatattg |
30468347 |
T |
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| Q |
101 |
caagttgaatttgaaaa |
117 |
Q |
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| T |
30468348 |
catgttgaatatgaaaa |
30468364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 30436506 - 30436640
Alignment:
| Q |
1 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggtaagattaatatttatatca |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||| |||||||||||||||| ||| |||| |||| || |
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| T |
30436506 |
aaagaatatttcaacttcaaaccgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaatttttaaattg |
30436605 |
T |
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| Q |
101 |
caagttgaatttgaaaaagctatattttggataaa |
135 |
Q |
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|||||| ||| |||||| | | |||||||||||| |
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| T |
30436606 |
caagttaaatatgaaaatgattcattttggataaa |
30436640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30475377 - 30475458
Alignment:
| Q |
1 |
aaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggta |
82 |
Q |
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||||||||||||||||||||| ||| ||||| ||||||||| | | |||||| | |||||| |||||||||||||||||| |
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| T |
30475377 |
aaagaatatttcaacttcaaatcgagcaagctgaacttacaaagaaagttatgatacaagttttcatccctggatggaggta |
30475458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 30482984 - 30483064
Alignment:
| Q |
5 |
aatatttcaacttcaaaccgaacaagccaaacttacaatgtcacttatgacaaaagtttacatccctggatggaggtaaga |
85 |
Q |
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||||||||||||||||| || ||||| |||||||| || | || ||| ||||||||||||||||| ||||||||||| |
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| T |
30482984 |
aatatttcaacttcaaaaggagcaagctgaacttacattggaaattttgatgaaagtttacatccctggttggaggtaaga |
30483064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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