View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_33 (Length: 273)
Name: NF3176_low_33
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 34560811 - 34561068
Alignment:
| Q |
1 |
aattttttagggtattgattattatgcatatcctaagccttggtcatccataattaatcaagtcttctttaaaaagggccggctagctaggtaatcaaac |
100 |
Q |
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| T |
34560811 |
aattttttagggcattgattattatgcatatcctaagccttggtcatccataattaatcaagtcttctttaaaaagggccggctagctaggtaatcaaac |
34560910 |
T |
|
| Q |
101 |
aaatattaaggcacctagtaataagtcataggtgttnnnnnnnttataaataccttcttcactccacaatatacctttgaaaagttattaaaattttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34560911 |
aaatattaaggcacctagtaataagtcataggtgtt-aaaaaattaaaaataccttcttcactccacaatatacctttgaaaagttattaaaattttcaa |
34561009 |
T |
|
| Q |
201 |
ataccaatgaattactcgccttctctttcacgtcgaaataaaagtattgctaatatatg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34561010 |
ataccaatgaattactcgccttctctttcacgtcgaaataaaagtattgctaatatatg |
34561068 |
T |
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