View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_low_35 (Length: 267)

Name: NF3176_low_35
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_low_35
NF3176_low_35
[»] chr2 (3 HSPs)
chr2 (1-254)||(20359148-20359401)
chr2 (1-254)||(20144638-20144891)
chr2 (1-254)||(20168883-20169136)
[»] chr3 (8 HSPs)
chr3 (163-255)||(5160445-5160537)
chr3 (157-215)||(45883635-45883693)
chr3 (165-250)||(46236661-46236746)
chr3 (177-250)||(47397175-47397248)
chr3 (1-49)||(5156266-5156314)
chr3 (157-242)||(47414068-47414153)
chr3 (163-215)||(5156416-5156468)
chr3 (1-49)||(5160295-5160343)
[»] chr8 (2 HSPs)
chr8 (153-215)||(9675598-9675660)
chr8 (153-215)||(9692620-9692682)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 20359148 - 20359401
Alignment:
Q  1 ttcgtcttccgtataaaaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||    
T  20359148 ttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaaaagatggactgccagctttagttgagaagat 20359247  T
Q  101 gacttcaaaatatgaattactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttca 200  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359248 gacttctaaatatgaattactacacgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttca 20359347  T
Q  201 tttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20359348 tttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattc 20359401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 20144638 - 20144891
Alignment:
Q  1 ttcgtcttccgtataaaaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||| ||||||||||    
T  20144638 ttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgcctaacgcaaaagatggactgccagctttagttgagaagat 20144737  T
Q  101 gacttcaaaatatgaattactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttca 200  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20144738 gacttctaaatatgaattactacatgaaaatcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttca 20144837  T
Q  201 tttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20144838 tttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccattc 20144891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 20169136 - 20168883
Alignment:
Q  1 ttcgtcttccgtataaaaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||    
T  20169136 ttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaaaagatggactgccagctttagttgagaagat 20169037  T
Q  101 gacttcaaaatatgaattactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttca 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  20169036 gacttcaaaatatgaattactacacgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgactttaaaattcctagattcaatgtttca 20168937  T
Q  201 tttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattc 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20168936 tttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccattc 20168883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 5160445 - 5160537
Alignment:
Q  163 aagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattca 255  Q
    ||||||||||||| | |||||||||||||||  ||||||||| ||||||||||  |||||  || |||||||||||||||| |||||| ||||    
T  5160445 aagtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttca 5160537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 45883693 - 45883635
Alignment:
Q  157 aagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 215  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  45883693 aagtcaaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaact 45883635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 46236746 - 46236661
Alignment:
Q  165 gtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttacc 250  Q
    |||||||| || || ||||||||||||||| |||| |||||  ||||||||| | ||||  | |||||||||||||||||||||||    
T  46236746 gtaggtgagttcaagattccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacc 46236661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 47397248 - 47397175
Alignment:
Q  177 aaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttacc 250  Q
    |||||||||||||||||  ||||| || |||||||||||  |||||   | |||||||||||||||||||||||    
T  47397248 aaaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacc 47397175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5156266 - 5156314
Alignment:
Q  1 ttcgtcttccgtataaaaaaggtcaagatacgcgtcaattctctatgta 49  Q
    ||||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  5156266 ttcgtcttccgtataaaaaaggcaaagataagcgtcgattctctatgta 5156314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 47414153 - 47414068
Alignment:
Q  157 aagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtg 242  Q
    |||| ||||||||||| || | ||||||||||||||| ||||||||||  |  |||| |  ||||| ||| |||||||||||||||    
T  47414153 aagtcaaagtaggtgacttcagaattccaagattcaaggtttcatttgaacaagaaatttctgatatcctgaaggagttaggagtg 47414068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 5156416 - 5156468
Alignment:
Q  163 aagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 215  Q
    |||||| |||||| | |||||||||||||||  ||||||||| ||||||||||    
T  5156416 aagtagttgaattcagaattccaagattcaaaatttcatttgagcttgaaact 5156468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5160295 - 5160343
Alignment:
Q  1 ttcgtcttccgtataaaaaaggtcaagatacgcgtcaattctctatgta 49  Q
    |||||||||||||||| |||||  |||||| ||||| ||||||||||||    
T  5160295 ttcgtcttccgtataagaaaggcaaagataagcgtccattctctatgta 5160343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 9675660 - 9675598
Alignment:
Q  153 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 215  Q
    |||| ||||||||||||| | ||  ||||||||||||||||  ||||||||||||||||||||    
T  9675660 aaacgagtgaaagtaggtaatttccaaattccaagattcaaattttcatttgggcttgaaact 9675598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 9692682 - 9692620
Alignment:
Q  153 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 215  Q
    |||| ||||| | ||||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  9692682 aaactagtgagaataggtgaattccaaattccaagattcaaattttcatttgggcttgaaact 9692620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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