View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_low_37 (Length: 258)

Name: NF3176_low_37
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_low_37
NF3176_low_37
[»] chr4 (4 HSPs)
chr4 (165-242)||(9785981-9786058)
chr4 (12-61)||(19881780-19881829)
chr4 (1-61)||(2931321-2931381)
chr4 (13-61)||(9195918-9195966)
[»] chr8 (4 HSPs)
chr8 (12-61)||(18881756-18881805)
chr8 (13-65)||(19924261-19924313)
chr8 (12-48)||(32400575-32400611)
chr8 (13-61)||(33895629-33895677)
[»] scaffold1875 (1 HSPs)
scaffold1875 (1-61)||(1000-1059)
[»] chr3 (2 HSPs)
chr3 (1-61)||(22416333-22416392)
chr3 (12-61)||(40836433-40836482)
[»] chr2 (3 HSPs)
chr2 (13-66)||(17368470-17368523)
chr2 (12-58)||(9787563-9787609)
chr2 (13-61)||(30714530-30714578)
[»] chr6 (1 HSPs)
chr6 (13-69)||(25819677-25819733)
[»] chr5 (1 HSPs)
chr5 (12-58)||(41663527-41663573)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 9786058 - 9785981
Alignment:
Q  165 aggattaattagttgcttctgatctactgcttctttattggttatttattttttgatgttattattagttaatgttca 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9786058 aggattaattagttacttctgatctactgcttctttattggttatttattttttgatgttattattagttaatattca 9785981  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 19881780 - 19881829
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    |||||||||||||||| ||||||||||||  |||||| ||||||||||||    
T  19881780 tcaaaattgcaacattttaaaatttagggaacgaaaagtgttgtttagcc 19881829  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2931381 - 2931321
Alignment:
Q  1 ttaatagtgaatcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||| ||| ||||||||||||||| ||||| |||| ||||||||| ||  ||||||||    
T  2931381 ttaatagagaaccaaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 2931321  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 9195918 - 9195966
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    |||||| |||||||| | |||||||||||||||||| || |||||||||    
T  9195918 caaaatcgcaacattttgaaatttagggggcgaaaagtggtgtttagcc 9195966  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 18881756 - 18881805
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  18881756 tcaaaattgcaacattataaaacttagggggcgaaaagtgttgtttagcc 18881805  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 19924313 - 19924261
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagccaaaa 65  Q
    ||||||||||||||| ||||| |||| ||||||||| ||  ||||||||||||    
T  19924313 caaaattgcaacattttaaaacttagagggcgaaaagtgaggtttagccaaaa 19924261  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 32400575 - 32400611
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaa 48  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  32400575 tcaaaattgtaacattttaaaatttagggggcgaaaa 32400611  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 33895629 - 33895677
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||||||||||| |||||| ||||||||||||| ||  ||||||||    
T  33895629 caaaattgcaacattttaaaatatagggggcgaaaagtgcagtttagcc 33895677  T

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Target: scaffold1875 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1000 - 1059
Alignment:
Q  1 ttaatagtgaatcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||| | ||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  1000 ttaataggggatcaaaattgcaacattataaaactta-ggggcgaaaagtgttgtttagcc 1059  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22416392 - 22416333
Alignment:
Q  1 ttaatagtgaatcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||| | ||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  22416392 ttaataggggatcaaaattgcaacattataaaactta-ggggcgaaaagtgttgtttagcc 22416333  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 40836433 - 40836482
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||| |||||||| ||||| |||||||||||||||||  ||||||||    
T  40836433 tcaaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcc 40836482  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17368470 - 17368523
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagccaaaat 66  Q
    ||||||||||||||| | |||  ||||||||||||| |||||||||||||||||    
T  17368470 caaaattgcaacattttgaaacatagggggcgaaaagtgttgtttagccaaaat 17368523  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 9787609 - 9787563
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaaatgttgttta 58  Q
    |||||||||||||||| |||||  ||||||||||||||||| |||||    
T  9787609 tcaaaattgcaacattttaaaacatagggggcgaaaaatgtagttta 9787563  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 30714530 - 30714578
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagcc 61  Q
    ||||||||||||||| |||||||||| ||||||||| ||  ||||||||    
T  30714530 caaaattgcaacattttaaaatttagagggcgaaaagtgaagtttagcc 30714578  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 25819733 - 25819677
Alignment:
Q  13 caaaattgcaacattataaaatttagggggcgaaaaatgttgtttagccaaaattat 69  Q
    ||||||||||||||| ||||| |||| ||||||||| ||  ||||||||||||||||    
T  25819733 caaaattgcaacattttaaaacttagagggcgaaaagtgaggtttagccaaaattat 25819677  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 41663573 - 41663527
Alignment:
Q  12 tcaaaattgcaacattataaaatttagggggcgaaaaatgttgttta 58  Q
    |||||||||||| ||| ||||||||||||| |||||||||| |||||    
T  41663573 tcaaaattgcaatattttaaaatttaggggtcgaaaaatgtagttta 41663527  T

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