View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_39 (Length: 253)
Name: NF3176_low_39
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 56069810 - 56069678
Alignment:
| Q |
17 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
116 |
Q |
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| T |
56069810 |
cacagaggtgtaccacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
56069715 |
T |
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| Q |
117 |
tttctcgtttctttccaatttcatcgacgatgtttcc |
153 |
Q |
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| T |
56069714 |
tttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 56069644 - 56069566
Alignment:
| Q |
154 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctgg |
232 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctgg |
56069566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 38398695 - 38398769
Alignment:
| Q |
154 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatc |
228 |
Q |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatc |
38398769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 38398508 - 38398594
Alignment:
| Q |
17 |
cacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
108 |
Q |
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| T |
38398508 |
cacagaggtgtaccacaattggcagaagctggtaag-acacttta----atctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 10171013 - 10171075
Alignment:
| Q |
161 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaac |
223 |
Q |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaac |
10171075 |
T |
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