View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_40 (Length: 252)
Name: NF3176_low_40
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_40 |
 | |
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| [»] scaffold0007 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6943688 - 6943932
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6943688 |
tggaagccttgagacaaggctttcaattccgcattggtgacggatccttctcattcttgtacgataactagatggggctaggagcgctttgtcacttggt |
6943787 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
200 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943788 |
tgattttgtcaacatttcagatactcatttacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
6943887 |
T |
|
| Q |
201 |
ctcaacactactattgatcatttcccccttcctttggcctttgat |
245 |
Q |
| |
|
|||| ||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
6943888 |
ctcagcacgactattgatcagttcccccctcctttggcctttgat |
6943932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 32455946 - 32455776
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||| |||||| |
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|
| T |
32455946 |
tggaagctttgagacaaggctttcaattccgcatcagtgacggatcctcctcattctggtatgataactggatggggctaggaacactttgtcccttggt |
32455847 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattgga |
171 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
32455846 |
tgattttgtcaacatttcggatactcaacttcaacttaagaatgttagttttattggatcatgggattgga |
32455776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 36126952 - 36126788
Alignment:
| Q |
42 |
ggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaagg |
141 |
Q |
| |
|
|||||||||||||||| |||| || | ||| | ||||| || | |||| |||||||||||||||| |||| |||| || ||| |||||| | ||||||| |
|
|
| T |
36126952 |
ggatcctcctcattctagtataattatctgacgaggctatgatcacttt-tcacttggttgattttgtcaatattttgggtacacaattatagcttaagg |
36126854 |
T |
|
| Q |
142 |
atgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaactcaaca |
207 |
Q |
| |
|
||||||||| ||||| | ||| |||| ||| ||| ||| |||||| |||||||| || ||||||| |
|
|
| T |
36126853 |
atgttagttaaattggctcatgggattagaaaaaattgacgacaatggttccaaaagagctcaaca |
36126788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 21277742 - 21277832
Alignment:
| Q |
86 |
gctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaa |
176 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||| | |||||||| |||||||| |||||||| |||| | | ||||||||||||| |
|
|
| T |
21277742 |
gctttgtcacttggttgattttatcaacacctcgaataattaattacaatttaaggatattagttttgttggctcgttagattggaataaa |
21277832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1273115 - 1273352
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||| |||||||||||| ||||||| || |||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
1273115 |
tggaagtcttgagacaaggatttcaatgccgcattggtgacggatcctcctcattttggtatgataactagacggggctaggagcgctttgtcacttggt |
1273214 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
200 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1273215 |
tgattttgtcaacattttggatactcaattacaacttacggatgttagttttattggatcatgggattggaataaactgatgacaatggttccaaacgag |
1273314 |
T |
|
| Q |
201 |
ctcaacactactattgatcatttcccccttcctttggc |
238 |
Q |
| |
|
|| ||||| ||||||||||| ||||| | ||||||||| |
|
|
| T |
1273315 |
ctaaacacgactattgatcagttccctcctcctttggc |
1273352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15579490 - 15579734
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
15579490 |
tggaagccttgagacaaggctttcaattacgcattggtgacggatcctcctcattctggtatgataactagaaggggctaggagagctttgtcacttggt |
15579589 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
200 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
15579590 |
tgattttgtcaacattttagatactcaattacaacttaaggatgttagctttaatggatcatgggattggaataaattgatgacaatagttccaaacgag |
15579689 |
T |
|
| Q |
201 |
ctcaacactactattgatcatttcccccttcctttggcctttgat |
245 |
Q |
| |
|
|| | ||| ||| ||||||| |||| | |||| ||||||||||| |
|
|
| T |
15579690 |
ctaatcacgactgttgatcagttccttcctcctctggcctttgat |
15579734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34422078 - 34422199
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||| ||||||| |
|
|
| T |
34422078 |
tggaagccttgagacaaggctttcaatttcgcattggtgatggatcctcctcattctagtatgataactggaccgggctaggagcactttgttacttggt |
34422177 |
T |
|
| Q |
101 |
tgattttttcaacatttcggat |
122 |
Q |
| |
|
||||||| | ||||||| |||| |
|
|
| T |
34422178 |
tgattttgttaacattttggat |
34422199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 34422194 - 34422281
Alignment:
| Q |
154 |
ttggattatgagattggaataaactgatgacaatagttccaaacgaactcaacactactattgatcatttcccccttcctttggccttt |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
34422194 |
ttggatcatgagattggaataaactgatgacaatggttccaaacgagctcagcacgactattgatca-atcccccctcctttggccttt |
34422281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 35389876 - 35389681
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
35389876 |
tggaagctttgagacaaggctttcaattttgcatcagtgacgtatcctcctcattctggtatgataactggacggggctaggagcactttgtcacttggt |
35389777 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaa |
196 |
Q |
| |
|
||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
35389776 |
tgattttgtccatatttcggatactcagttacaacttaaggatgttagttttattggatcatgggattggaataagttgatgacaatggttccaaa |
35389681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13882230 - 13881986
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||| |||||| |||||| |||||| |||||||||| || ||||||| ||||| |||||||| ||||| | |
|
|
| T |
13882230 |
tggaagtcttgagacaatgctttcaattctgcatcggtgacagatccttctcatttttgtatgatagctggatggggttaggatcgctttgttacttgat |
13882131 |
T |
|
| Q |
101 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
200 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| | ||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
13882130 |
tgattttgtcaacttttcggatacataattatagcttaaggatgttagttttattagatcatgggattggaataaactaatgacaatcgtttcaaacgag |
13882031 |
T |
|
| Q |
201 |
ctcaacactactattgatcatttcccccttcctttggcctttgat |
245 |
Q |
| |
|
|||| || ||| ||||||| || |||| |||||||| |||||| |
|
|
| T |
13882030 |
ctcatgacgactgttgatcaatttcccccacctttggcatttgat |
13881986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 51600468 - 51600304
Alignment:
| Q |
44 |
atcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaaggat |
143 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||| ||| ||| | ||||| ||||||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
51600468 |
atcctcctcattctggtatgataattggatggggctagtagcacttcgccacttcgttgattttgtcaacatttcaaatactcaattaaaaattaaggat |
51600369 |
T |
|
| Q |
144 |
gttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaactcaacac |
208 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
51600368 |
gttagctttattggatcatgagtttggaataaactaatgacaatggttccaaacgacctcaacac |
51600304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38262008 - 38261887
Alignment:
| Q |
1 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38262008 |
tggaagccttgagacaaggctttcgattccgcatcggtgacggatgctcctaattctagtttgataactagacggggctaggagcgctttgtcacatggt |
38261909 |
T |
|
| Q |
101 |
tgattttttcaacatttcggat |
122 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
38261908 |
tgatttagtcaacatttcggat |
38261887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 38261865 - 38261783
Alignment:
| Q |
161 |
atgagattggaataaactgatgacaatagttccaaacgaactcaacactactattgatcatttcccccttcctttggcctttgat |
245 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| | | ||||||| | |||| |||||||| ||||||| |
|
|
| T |
38261865 |
atgagattggaataaactgatgacaatggttccaaacaaactcaacacgattgttgatcaat--ccccatcctttggactttgat |
38261783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 242923 - 243076
Alignment:
| Q |
59 |
gtatgataacttgatggggctaggagcgctttgtcact----tggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttat |
154 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||| |||||| |||||| ||| || |
|
|
| T |
242923 |
gtatgataactggatggggctaggagcgctttgttactagcttggttgattttgtcaacatttcagatactcaattacagcttaagaatgttactttaat |
243022 |
T |
|
| Q |
155 |
tggattatgagattggaataaactgatgacaatagttccaaacgaactcaacac |
208 |
Q |
| |
|
||||| ||| ||||| |||||||| || ||||| ||| ||||||| |||||||| |
|
|
| T |
243023 |
tggatcatgggattgaaataaactaataacaatggtttcaaacgagctcaacac |
243076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 33374219 - 33374109
Alignment:
| Q |
45 |
tcctcctcattcttgtat--gataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaagga |
142 |
Q |
| |
|
|||||||||||||||||| || || |||| || ||| |||| ||||||||||||||||||| |||| ||||| |||| ||||||||| ||||| | |
|
|
| T |
33374219 |
tcctcctcattcttgtatatgacaatcggatgtggttagaagcgttttgtcacttggttgatttcgtcaatatttcagatattcaattacagtttaagaa |
33374120 |
T |
|
| Q |
143 |
tgttagtttta |
153 |
Q |
| |
|
||||||||||| |
|
|
| T |
33374119 |
tgttagtttta |
33374109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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