View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_43 (Length: 241)
Name: NF3176_low_43
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5863764 - 5863546
Alignment:
| Q |
1 |
aaggaaacaagcaatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatgaccatgatgtggtcctcaaaag |
100 |
Q |
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| T |
5863764 |
aaggaaacaagcaatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatga------tgtggtcctcaaaag |
5863671 |
T |
|
| Q |
101 |
aaaactagaagggtattgtggtcctcatcaacatcaacaaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaaca |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863670 |
aatactagaagggtattgtggtcctcatcaacatcaataaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaaca |
5863571 |
T |
|
| Q |
201 |
ccacgtagcccctaaatggaagttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5863570 |
ccacgtagcccctaaatggaagttt |
5863546 |
T |
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