View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_low_45 (Length: 236)
Name: NF3176_low_45
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20169549 - 20169769
Alignment:
| Q |
1 |
ttggaatagtggtattgctatttannnnnnnccaataactaaatcaacttattaaaatacatcctgcaattaagtaaatcaaatcacatagaaggcacca |
100 |
Q |
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| T |
20169549 |
ttggaatagtggtattgctattt-tttttttccgataactacatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcacca |
20169647 |
T |
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| Q |
101 |
gaggatagcaccaacgaggttatttcaagaag--nnnnnnnntctgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaatt |
198 |
Q |
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| T |
20169648 |
gaggatagcaccaacgaggttatttcaagaagaaaaaaaaaaactgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaatt |
20169747 |
T |
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| Q |
199 |
atcacgtactatttgtttgaag |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
20169748 |
atcacgtactatttgtttgaag |
20169769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 20251113 - 20251034
Alignment:
| Q |
35 |
ataactaaatcaacttattaaaatacatcctgcaattaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20251113 |
ataactaaatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
20251034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 20143818 - 20143741
Alignment:
| Q |
143 |
tgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatcacgtactatttgtttgaag |
220 |
Q |
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| T |
20143818 |
tgagatatgcaaaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatcacgtactatttgtttgaag |
20143741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 20143912 - 20143850
Alignment:
| Q |
52 |
ttaaaatacatcctgcaattaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
114 |
Q |
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| T |
20143912 |
ttaaaatacatcctgcaattaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa |
20143850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 20250999 - 20250940
Alignment:
| Q |
142 |
ctgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatc |
201 |
Q |
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| T |
20250999 |
ctgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatc |
20250940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 20358346 - 20358303
Alignment:
| Q |
149 |
atgcacaccttggttagaaaatcaagtgaagccggcgttgcttt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20358346 |
atgcacaccttggttagaaaatcaagtgaagccggcgttgcttt |
20358303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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