View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_5 (Length: 760)
Name: NF3176_low_5
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_5 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 42715282 - 42714705
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42715282 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatg---------ttgtcactttccaatttggttttaccattttgtacaaaaggt |
42715192 |
T |
|
| Q |
119 |
gtcaaatgtagaaaacttgaattgattttacattaattttttgagttaattattctatttcagttacataactttcttctattgaagtgttggctcattc |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42715191 |
gtcaaatgtagaaaacttgaattggttttacattaattttatgagttaattattctatttcagttacataactttcttctattgaagtattggctcattc |
42715092 |
T |
|
| Q |
219 |
aatggaggtgttttggttccaagtattggctcattttctattaaagtgtaaaattggggtgactttttataagggaggcattagggttgtgttgtaaatt |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42715091 |
aatggaggtgttttggttccaagtattgggtcattttctattgaagtgtaaaattggggtgactttttataagggaggcattagggttgtgttgtaaatt |
42714992 |
T |
|
| Q |
319 |
ggaatttgttgatttgtctaactagattagcttt-gcagggttcaatagctcatactttagccttggtaaactaattggttgtttttatcaatttttaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42714991 |
ggaatttgttgatttgtctaactagattagctttggcggggttcaatagctcatactttagccttggtaaactaattggttgtttttatcaattttcaac |
42714892 |
T |
|
| Q |
418 |
tgatgggataaatac-taatc--tttatttggaatttcaggagaacataatggactgaagttgaactatttaactcaaattttgatccgcgtgagtcatc |
514 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
42714891 |
tgatgggataaatacttaatctttttatttggaatttcaggagaacataatggactgaagttaaactatttaactcaaattttgatccacgtgagtcatc |
42714792 |
T |
|
| Q |
515 |
cttctaaaatatccttattatataataattagcttggtggtgggactattttttgatcttctgttatgctgtgttggtctgttatga |
601 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| |||||||||| |||||||||| |
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| T |
42714791 |
cttctaaaatatccttattatataatgattagtttggtggtgggactattttttgacctcctgtgttgctgtgttgatctgttatga |
42714705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 3380173 - 3380360
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| |||||| | ||||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
3380173 |
catcatctttagtattggaattatatgtcaatgaattatattttccatgccttttatgttgtcactttccaattttgttttaccattttgtgcagaaggt |
3380272 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
3380273 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
3380360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 628 - 753
Target Start/End: Original strand, 52955743 - 52955867
Alignment:
| Q |
628 |
gtgcagttttgggtactgctaagttgttcaattttactgattttgtgtccagcttttccagtttttaggagctgttgcgattgaatagtgctgnnnnnnn |
727 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52955743 |
gtgctgttttgggtactgctaaggtgttcaattttactgattttgtgtccagcttttccagtttttaggagctgttgcgattgaatggtgctg-tttttt |
52955841 |
T |
|
| Q |
728 |
atttatggctctgtcgaccgcctttg |
753 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
52955842 |
atttatggctctgtcgaccacctttg |
52955867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 587
Target Start/End: Original strand, 52955686 - 52955745
Alignment:
| Q |
528 |
cttattatataataattagcttggtggtgggactattttttgatcttctgttatgctgtg |
587 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
52955686 |
cttattatataatgattagcttggtggtgggactattttttgaccttctgtgctgctgtg |
52955745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 52003 - 51816
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| ||||||| | ||||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
52003 |
catcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcactttccaattttgttttaccattttgtgcagaaggt |
51904 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
51903 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
51816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 5953 - 6140
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| ||||||| | ||||||||||| ||||| | | |||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5953 |
catcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcactttccaatttttttttaccattttgtgcagaaggt |
6052 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6053 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
6140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 15865 - 16052
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| ||||||| | ||||||||||| ||||| | | |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
15865 |
catcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcactttccaatttttttttaccattttgtgcagaaggt |
15964 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15965 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
16052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 23116 - 22929
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| ||||||| | ||||||||||| ||||| | | |||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
23116 |
catcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcactttccaatttttttttaccattttgtgcagaaggt |
23017 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23016 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
22929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 44497440 - 44497627
Alignment:
| Q |
19 |
catcacctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaaggt |
118 |
Q |
| |
|
||||| ||||| |||||||| ||||||| | ||||||||||| ||||| | | ||| |||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
44497440 |
catcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgctgtcactttccaattttgttttaccattttgtgcagaaggt |
44497539 |
T |
|
| Q |
119 |
gtcaaatgtagaaa------acttgaattgattttacat-taattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44497540 |
gtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttcta |
44497627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 24469727 - 24469632
Alignment:
| Q |
104 |
ttttgtgcaaaaggtgtcaaatgtagaaaacttgaattgattttacattaattttttgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | |||| |||||||| |||| |||| ||||||||||||||||| ||||||| ||||||||| |
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|
| T |
24469727 |
ttttgtgcaaaagttgtcagatgtggaaaactaggattggttttacatagcttttctgagctaattattctatttcagctacataagtttcttcta |
24469632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 36930983 - 36930809
Alignment:
| Q |
25 |
ctttattattggaagaatatgtgatcaaattatatttttcatgcttctcatgttgtcactttccaatttggttttaccattttgtgcaaaag-gtgtcaa |
123 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||| ||||| | ||||| | ||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
36930983 |
ctttagtattggaagaatatgtcaatgaattatatttt-catgcctttcatgctatcactttccaaatattttttaccattttgtgcaaaaaagtgtcaa |
36930885 |
T |
|
| Q |
124 |
atgtagaaaacttgaattgattttacattaattttt-tgagttaattattctatttcagttacataactttcttcta |
199 |
Q |
| |
|
|||||||||| ||| ||| |||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
36930884 |
atgtagaaaatttgg-ttggttttacatagttttttctgagttaattattatatttcatctacataactttcttcta |
36930809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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