View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_low_9 (Length: 536)
Name: NF3176_low_9
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 67 - 532
Target Start/End: Complemental strand, 3525135 - 3524669
Alignment:
| Q |
67 |
tatcaaatatctctctctgtatgcattaaacaaaatcattgtttatcgttgtnnnnnnntatattgaagtttatattttatattaaattctttaaagtaa |
166 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3525135 |
tatcaaatatatctctctatatgcattaaacaaaatcattgtttatcgttgtaaaaaaatatattgaagtttatattttatattaaattctttaaagtaa |
3525036 |
T |
|
| Q |
167 |
gactcaaagttaaatacatctagggctccttatgcaagtatgctaacgttagatcccaaccacacat-attttttaaaatataaaatgttagggattatt |
265 |
Q |
| |
|
|| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
3525035 |
gaatcaaagttaaatacaactagggtttcttatgcaattatgctaacgttagatcccaaccacacatgattttttaaaatataaaatgttagagcttatt |
3524936 |
T |
|
| Q |
266 |
taaaagtttatttagctaaacatactaggttacaatccacataaagtttttcagatctatcaagtctgcataccaaatggtaaatgtttgaatcagctaa |
365 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
3524935 |
taaaagtttatttagctaaacatatcaggttacgactcacataaagtctttcagatctataaagtcggtataccaaatggtaaatgtttgaatcagctaa |
3524836 |
T |
|
| Q |
366 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagtttattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3524835 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagttaattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
3524736 |
T |
|
| Q |
466 |
tcatgattgaggaccaacaatgttttactttaataatcataatcattggctctcaaataaggcctta |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3524735 |
tcatgattgaggaccaacaatgttttactttaataatcataatcattggctctcaaataaggcctta |
3524669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University