View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177-Insertion-1 (Length: 1013)
Name: NF3177-Insertion-1
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 920; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 920; E-Value: 0
Query Start/End: Original strand, 8 - 1009
Target Start/End: Complemental strand, 37853314 - 37852309
Alignment:
| Q |
8 |
tttactatttctgatctttgtgtattttgactttcagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgt |
107 |
Q |
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| T |
37853314 |
tttactatttctgatctttgtgtattttgactttcagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgt |
37853215 |
T |
|
| Q |
108 |
tgctgttattgtatatgatgtagctagtaagttttatgnnnnnnnaataacaatttcatcatctaattaatattatgttaattttcatctgatatgtgtt |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37853214 |
tgctgttattgtatatgatgtagccagtaagttttatgtttttttaataacaatttcatcatctaattaatattatgttaattttcatctgatatgtgtt |
37853115 |
T |
|
| Q |
208 |
tgcatttgaatgcgaaagttctttagtgagtttaatgttcatttttcatataaataacagtatatttaacctcaatttatagttattaaccttagtaagc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37853114 |
tgcatttgaatgcgaaagttctttagtgagtttaatgttcatttttcatataaataacaatatatttaacctcaatttatagttattaaccttagtaagc |
37853015 |
T |
|
| Q |
308 |
tattctaat------gtagacaggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggtagtgatgttataattgtcttgg |
401 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37853014 |
tattctaattctaatgtagacaggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggtagtgatgttataattgtcttgg |
37852915 |
T |
|
| Q |
402 |
ttggaaacaaaactgatcttgtcgagaaaaggtgagtactgaattaccgagtttgatctatatattcattcacaatcggttttctgactgggtatggttt |
501 |
Q |
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| T |
37852914 |
ttggaaacaaaactgatcttgtcgagaaaaggtgagtactgaattaccgcgtttgatctatatattcattcacaatcggttttctgactgggtatggttt |
37852815 |
T |
|
| Q |
502 |
agtttttgtttaatatcatattggagttttcatattatgtttcaatgcatcttgtttagttgctcgaatttttggcatagaaatagttaataatttacca |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37852814 |
agtttttgtttaatatcatattggagttttcatattatgtttcaatgcatcttgtttagttgctcgaatttttggcatagaaatagttaataatttacta |
37852715 |
T |
|
| Q |
602 |
tgttctttatagttttgctatgataggtcaagtgtcttgcagtggcatacctaatagccaattcagttaatttcattaacaaaggtctttcaagtttcaa |
701 |
Q |
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| T |
37852714 |
tgttctttatagttttgctatgataggtcaagtgtcttgcagtggcatacctaatagccaattcagttaatttcattaacaaaggtctttcaagtttcaa |
37852615 |
T |
|
| Q |
702 |
gtattgcgatgttactgtctaattatttattacatggccactttgtttacaggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaat |
801 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37852614 |
gtattgcgatgttactgtctaattatttattacatggccgctttgtttacaggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaat |
37852515 |
T |
|
| Q |
802 |
catgtttatcgaaaccagtgcaaaagcaggcttcaatatcaaggtcagaattaatgggattttggatttgcatagttgctttggtattttgttttactag |
901 |
Q |
| |
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| T |
37852514 |
catgtttatcgaaaccagtgcaaaagcaggcttcaatatcaaggtcagaattaat-ggattttggatttgcatagttgctttggtattttgttttactag |
37852416 |
T |
|
| Q |
902 |
agcatgctcctcaactatgatgcattgtgatctataacatcattatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatac |
1001 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37852415 |
agcatgctcctcaactatgatgca-tgtgatctataaaatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatac |
37852317 |
T |
|
| Q |
1002 |
ctattttg |
1009 |
Q |
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|||||||| |
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| T |
37852316 |
ctattttg |
37852309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 298 - 439
Target Start/End: Complemental strand, 39527152 - 39527011
Alignment:
| Q |
298 |
cttagtaagctattctaatgtagacaggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggtagtgatgttataattgtc |
397 |
Q |
| |
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||||| ||||| |||| ||| ||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||| || ||||||||||| || || |
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| T |
39527152 |
cttagcaagctgttctgatgcagatcggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacgaggcagtgatgttattatcgtt |
39527053 |
T |
|
| Q |
398 |
ttggttggaaacaaaactgatcttgtcgagaaaaggtgagta |
439 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||| |
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| T |
39527052 |
ttggttggaaacaaaactgatcttgttgaaaaaaggtgagta |
39527011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 39528670 - 39528573
Alignment:
| Q |
42 |
cagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgttgctgttattgtatatgatgtagctagtaagt |
139 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| || || |||||||| ||||| || |||||||||| |
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| T |
39528670 |
cagggatactgcagggcaagaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagt |
39528573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 752 - 846
Target Start/End: Complemental strand, 39526378 - 39526284
Alignment:
| Q |
752 |
aggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaatcatgtttatcgaaaccagtgcaaaagcaggcttcaatatcaaggt |
846 |
Q |
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|||||||| |||||||| ||||||||||||||||| ||| || ||||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
39526378 |
aggcaagtctctatagaggaaggagatgccaagtcgcgtgagagcgggatcatgtttatagaaactagtgcaaaagcaggatttaatatcaaggt |
39526284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 4582311 - 4582409
Alignment:
| Q |
42 |
cagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgttgctgttattgtatatgatgtagctagtaagtt |
140 |
Q |
| |
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||||||||| || || || ||||||||||||||||| |||||||||||||| | || || || || || ||||||||||||||||| || |||||||| |
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| T |
4582311 |
cagggatacggctggacaggaaagatttagaagtcttattccaagctacatccgggactcatccgtagccgttattgtatatgatgttgcaagtaagtt |
4582409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 40878459 - 40878374
Alignment:
| Q |
43 |
agggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgttgctgttattgtatatgatgt |
128 |
Q |
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||||||||||| || || || |||||||||||||| |||||||||||||| || || || ||||||||||| || || |||||||| |
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| T |
40878459 |
agggatactgctggacaggagagatttagaagtcttattccaagctacattagggactcatctgttgctgtcatcgtttatgatgt |
40878374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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