View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177-Insertion-10 (Length: 459)
Name: NF3177-Insertion-10
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 11589293 - 11589555
Alignment:
| Q |
30 |
attatagaactataggaaaaacttgtcatcctaaaccctttagatgatgattatttattgaaacataacgggtttggccaatttgttgtcaagattggat |
129 |
Q |
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| T |
11589293 |
attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaatttattgtcaagattggat |
11589392 |
T |
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| Q |
130 |
cataaaagataaattcttactaataaatcc-gaatttgttttatttgttgaactatggatggattctaaagattctcccttaaactgactcaataaaata |
228 |
Q |
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| T |
11589393 |
cataaaagattaattcttactaaaaaaacccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataata |
11589492 |
T |
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| Q |
229 |
tgtcctaagctattttcctttaatgctatacaaaacctttcacaatatttatggagcacttgt |
291 |
Q |
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| T |
11589493 |
tgtcctaagctattttcctttaatgctatacaaaacgtttcacaatatttatggagcacttgt |
11589555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 11601878 - 11602140
Alignment:
| Q |
30 |
attatagaactataggaaaaacttgtcatcctaaaccctttagatgatgattatttattgaaacataacgggtttggccaatttgttgtcaagattggat |
129 |
Q |
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| T |
11601878 |
attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaatttattgtcaagattggat |
11601977 |
T |
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| Q |
130 |
cataaaagataaattcttactaataaatcc-gaatttgttttatttgttgaactatggatggattctaaagattctcccttaaactgactcaataaaata |
228 |
Q |
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| T |
11601978 |
cataaaagattaattcttactaaaaaaacccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataata |
11602077 |
T |
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| Q |
229 |
tgtcctaagctattttcctttaatgctatacaaaacctttcacaatatttatggagcacttgt |
291 |
Q |
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| T |
11602078 |
tgtcctaagctattttcctttaatgctatacaaaacgtttcacaatatttatggagcacttgt |
11602140 |
T |
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