View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177-Insertion-11 (Length: 371)
Name: NF3177-Insertion-11
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 43002893 - 43002538
Alignment:
| Q |
16 |
ataattgttgcagttgtcttatcactgatcatcactacaacccaaggacatagttttataactgtaacacaatttaaaatgatatccaaattaggagtga |
115 |
Q |
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| T |
43002893 |
ataattgttgcagttgtcttatcactgatcatcactacaacccaaggacatagttttataactgtaacacaatttaaaatgatatccaatttaggagtga |
43002794 |
T |
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| Q |
116 |
atattctaatggatccatttttataatggcagcactatattccaaaacagtggtcacaaaatttgtgaatcctgaaagctaatgatagtgatggaccact |
215 |
Q |
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| T |
43002793 |
atattctaatggatccatttttataatggcagcactatattccaaaccagtggtcacaaaatttgtgaatcctgaaagctaatgatagtgatggaccact |
43002694 |
T |
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| Q |
216 |
aacatgatttcaatgaattttgaaacacagaattcaacacctgaaattataagggatgatcccagtagaagtagggtttttcgactttggcattcacttc |
315 |
Q |
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| T |
43002693 |
aacatgatttcaatgaattttgaaacacagaattcaacacctgaaattataagggatgatcccagtagaagtagggttgttcgactttggcattcacttc |
43002594 |
T |
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| Q |
316 |
ttagtttcccttccttttcatgtctctaatctcccacaccctgcattttgtaatag |
371 |
Q |
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| T |
43002593 |
ttagtttcccttccttttcatgtctctaatctcccacaccctgcattttgtaatag |
43002538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 24177847 - 24178016
Alignment:
| Q |
65 |
atagttttataactgtaacacaatttaaaatgata-tccaaattaggagtgaatattctaatggatccatttttataatggcagcactatattccaaaac |
163 |
Q |
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| T |
24177847 |
atagttttataattgtaacacaatttaaaatgaaattccaaacaaggagttaatgttgtgatggatccagtttcataatggcagta--atattctagtac |
24177944 |
T |
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| Q |
164 |
agtggt-cacaaaatttgtgaatcctgaaagctaatgatagtgatggaccactaacatgatttcaatgaattttg |
237 |
Q |
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| T |
24177945 |
agtggtccacaagatttgtgaatcatgaa---cattaataatgatggaccactaacaagattacagtgaattttg |
24178016 |
T |
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