View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177-Insertion-12 (Length: 315)
Name: NF3177-Insertion-12
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-12 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 55665895 - 55666202
Alignment:
| Q |
8 |
gtaactacccaagcagcttcaaactaaacaaacaaagtcatacaaacnnnnnnnnttcaactacaccatacaacataaatttccaaaaggtagacaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55665895 |
gtaactacccaagcagcttcaaactaaacaaacaaagtcatacaaacaaaaaaaattcaactacaccatacaacataaatttccaaaaggtagacaagtt |
55665994 |
T |
|
| Q |
108 |
tgaaacaaacccgaagtttaggaaaatcatccctcagtataaattcgagaaatcgagttacaacaaaggattgaatgattttctcgatgggagggttgtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55665995 |
tgaaacaaacccgaagtttaggaaaatcatccctcggtataaattcgagaaatcgagttacaacaaaggattgaatgattttctcgatgggagggttgtg |
55666094 |
T |
|
| Q |
208 |
tgtcaaaagaagcttcctaaatttagtagctccttctagttgtttgctgttatcatccgaccagaccatagcaacaattgcaggaagactctctaactgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55666095 |
tgtcaaaagaagcttcctaaatttagtagctccttctagttgtttgctgttatcatccgaccagaccatagcaacaattgcaggaagactctctaactgt |
55666194 |
T |
|
| Q |
308 |
aacaacaa |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
55666195 |
aacaacaa |
55666202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 55660023 - 55660065
Alignment:
| Q |
248 |
tgtttgctgttatcatccgaccagaccatagcaacaattgcag |
290 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55660023 |
tgttggctgttatcatccgaccagaccatagcaactattgcag |
55660065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 54862499 - 54862538
Alignment:
| Q |
15 |
cccaagcagcttcaaactaaacaaacaaagtcatacaaac |
54 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
54862499 |
cccaagcagcctcaaactaaacaaacaaagtcacacaaac |
54862538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 55635054 - 55635024
Alignment:
| Q |
15 |
cccaagcagcttcaaactaaacaaacaaagt |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55635054 |
cccaagcagcttcaaactaaacaaacaaagt |
55635024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University