View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3177-Insertion-13 (Length: 221)

Name: NF3177-Insertion-13
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3177-Insertion-13
NF3177-Insertion-13
[»] chr1 (5 HSPs)
chr1 (23-221)||(45709119-45709317)
chr1 (27-218)||(40821104-40821295)
chr1 (95-217)||(6463971-6464093)
chr1 (142-218)||(12467737-12467816)
chr1 (23-72)||(292516-292565)
[»] chr3 (6 HSPs)
chr3 (8-221)||(44940053-44940263)
chr3 (28-217)||(30812157-30812345)
chr3 (28-217)||(35424632-35424821)
chr3 (28-191)||(8426441-8426604)
chr3 (142-218)||(53179352-53179431)
chr3 (29-114)||(50663712-50663797)
[»] chr6 (3 HSPs)
chr6 (51-217)||(6208694-6208860)
chr6 (142-218)||(29409724-29409801)
chr6 (29-117)||(16442939-16443027)
[»] chr8 (1 HSPs)
chr8 (8-221)||(36122186-36122398)
[»] chr2 (3 HSPs)
chr2 (23-221)||(40262126-40262324)
chr2 (23-221)||(14820391-14820593)
chr2 (29-117)||(9989261-9989349)
[»] chr4 (3 HSPs)
chr4 (32-221)||(32238748-32238936)
chr4 (8-221)||(54152258-54152456)
chr4 (27-218)||(14071766-14071959)
[»] chr5 (4 HSPs)
chr5 (8-218)||(33954541-33954748)
chr5 (28-191)||(2430946-2431108)
chr5 (142-221)||(40495862-40495941)
chr5 (23-72)||(41741389-41741438)
[»] scaffold0018 (1 HSPs)
scaffold0018 (143-218)||(193204-193282)
[»] chr7 (2 HSPs)
chr7 (142-221)||(1554278-1554360)
chr7 (29-117)||(37562000-37562088)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 45709119 - 45709317
Alignment:
Q  23 tttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttg 122  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  45709119 tttttcttgtttgggtgaatgaaaagtgctttcaggaaactcagttttgatctcaaaaggccagtacaacagaagctggtattcctagcttctgcttttg 45709218  T
Q  123 tgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttcttc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45709219 tgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcccatgaataaacatctttcttcttcttcttc 45709317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 40821104 - 40821295
Alignment:
Q  27 tcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaa 126  Q
    ||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||  ||||||| |||||||||||||||| ||  ||| |||| |||    
T  40821104 tcttgtttgggtgaatgaaaagtgcgtccaggaaactcagttttgatctcaaaacgcgtgtacaactgaagctggtattcctagctattgcgtttgggaa 40821203  T
Q  127 actcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttc 218  Q
    ||||  |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |||| |||||||||||||||||||    
T  40821204 actcgattttcatttcaatgacatgtatagttaccaatatacccatgttttcttctccaattttttacgaatgaacatctttcttcttcttc 40821295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 6463971 - 6464093
Alignment:
Q  95 aagctggtattcctaacttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctat 194  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6463971 aagctggtatttctagcttctgcttttgagaaactcagttttgattacaatgacatgtatagttaccaatatacctatgttttcttccccaatttcctat 6464070  T
Q  195 gaataaacatctttcttcttctt 217  Q
    |||||||||| ||||||||||||    
T  6464071 gaataaacatttttcttcttctt 6464093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 12467737 - 12467816
Alignment:
Q  142 caatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaata---aacatctttcttcttcttc 218  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||   |||||||||||||||||||    
T  12467737 caatgacaagtatagttaccaatatacccatgttttcttctccaatttcccatgaataaacaacatctttcttcttcttc 12467816  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 292565 - 292516
Alignment:
Q  23 tttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttga 72  Q
    ||||| ||||||||||||||||||||| ||| ||  ||||||||||||||    
T  292565 ttttttttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttga 292516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 44940263 - 44940053
Alignment:
Q  8 gttttcagatttttctttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcc 107  Q
    ||||||||||||||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44940263 gttttcagattttt---tttcttgtttgggtgaatgaaaagtgctttcaggaaactcagttttgatctcaaaaagtcagtacaacagaagctggtattcc 44940167  T
Q  108 taacttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctt 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  44940166 tagcttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatatccatgttttcttccccaatttcttatgaatatacatctt 44940067  T
Q  208 tcttcttcttcttc 221  Q
    ||||||||||||||    
T  44940066 tcttcttcttcttc 44940053  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 30812345 - 30812157
Alignment:
Q  28 cttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaa 127  Q
    |||||||||||||||||||||||||| ||  ||||| |||||| |  |||||| ||  ||||| | ||||  || ||||||| ||| ||| |||||||||    
T  30812345 cttgtttgggtgaatgaaaagcacttccaa-aaacttagttttaagatcaaaatgctggtacagctgaagaagggattcctagcttttgcgtttgtgaaa 30812247  T
Q  128 ctcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttctt 217  Q
    || |||||||||| | |||||||||||||||||||| ||||| || |||||||| |||||||||||  ||||||||||||||||||||||    
T  30812246 ctgagttttgatttctatgacatgtatagttaccaacatacctatattttcttctccaatttcctaataataaacatctttcttcttctt 30812157  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 35424632 - 35424821
Alignment:
Q  28 cttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaa 127  Q
    |||||||||||||||||||||||||||||  ||||||||||||||   ||||| |   ||| |   ||||  || ||||||| ||| ||| || ||||||    
T  35424632 cttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgagaccaaaacgttggtatagttgaagtaggaattcctagcttttgcgttggtgaaa 35424731  T
Q  128 ctcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttctt 217  Q
    || || ||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||    
T  35424732 ctgagatttgatttctatgacatgtatagttaccaatatactcatgttttcttctccaatttcctagtaataaacatctttcttcttctt 35424821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 8426604 - 8426441
Alignment:
Q  28 cttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaa 127  Q
    ||||||| | |||||||||||| ||| ||  ||||||||||||||  |||||| ||| ||||| |  |||| || ||||||| ||||||  |||||||||    
T  8426604 cttgttttgatgaatgaaaagcgcttccaaaaaactcagttttgagatcaaaacgccggtacagctaaagcaggaattcctagcttctgagtttgtgaaa 8426505  T
Q  128 ctcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcc 191  Q
    ||| |||||||||  ||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  8426504 ctcggttttgatttaaatgacatgtatagttaccaatatatccatcttttcttctccaatttcc 8426441  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 53179352 - 53179431
Alignment:
Q  142 caatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaata---aacatctttcttcttcttc 218  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||   |||||||||||||||||||    
T  53179352 caatgacaagtatagttaccaatatacccatgttttcttctccaatttcccatgaataaacaacatctttcttcttcttc 53179431  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 50663712 - 50663797
Alignment:
Q  29 ttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttc 114  Q
    ||||||||||||||||||||  |||  || |||||  ||||||||||||||| ||||||    | |||||||||||||||| ||||    
T  50663712 ttgtttgggtgaatgaaaagtgcttatagaaaacttggttttgatctcaaaacgccagttggcctgaagctggtattcctagcttc 50663797  T

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Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 6208860 - 6208694
Alignment:
Q  51 ctttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaactcagttttgattacaatgacat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6208860 ctttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaactcagttttgattacaatgacat 6208761  T
Q  151 gtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttctt 217  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6208760 gtatagttaccaatatacccatattttcttccccaatttcctatgaataaacatctttcttcttctt 6208694  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 29409801 - 29409724
Alignment:
Q  142 caatgacatgtatagtt-accaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttc 218  Q
    |||||||| |||||||| ||||||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||    
T  29409801 caatgacaagtatagtttaccaatatacccatgttttattctacaatttcctatgaataaaaatctttcttcttcttc 29409724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 16443027 - 16442939
Alignment:
Q  29 ttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgc 117  Q
    ||||||| ||||||||||||| | | |||| |||||||||||||   ||||| ||||||   |  |||||||||||||||| |||||||    
T  16443027 ttgtttgtgtgaatgaaaagcgcgtccagggaactcagttttgagaccaaaacgccagttgtattgaagctggtattcctagcttctgc 16442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 36122398 - 36122186
Alignment:
Q  8 gttttcagatttttctttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcc 107  Q
    |||| ||||||||| ||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||     
T  36122398 gtttccagattttttttttt-ttgtttgggtgaataaaaagtgctttcaggaaactcagttttgatctcaaaacgccaatacaacagaagctggtattct 36122300  T
Q  108 taacttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctt 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  36122299 taacttctgcttttgtgaaactcaattttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcttatgaataaacatttt 36122200  T
Q  208 tcttcttcttcttc 221  Q
    ||||||||||||||    
T  36122199 tcttcttcttcttc 36122186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 40262324 - 40262126
Alignment:
Q  23 tttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttg 122  Q
    ||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||  |||||||||||    
T  40262324 tttttcttgtttgggagaatgaaaagtgctatcaggaaactcagttttgatctcaaaacgtcagtacaacataagctggtattcctagtttctgcttttg 40262225  T
Q  123 tgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttcttc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40262224 tgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatttttcttcttcttcttc 40262126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 14820391 - 14820593
Alignment:
Q  23 tttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttg 122  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||| | | ||||||||    
T  14820391 tttttcttgtttgggtgaatgaaaagtgctttcgggaaactcagttttgatctcaaaacgccagtgcaacagaagctgatattcctagcatatgcttttg 14820490  T
Q  123 tgaaactcagttttgattacaatgacatgtatagttaccaata----tacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttc 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  14820491 tgaaactcaattttgattacaatgacatgtatagttaccaatatacgtacccatgttttcttccccaattttctatgaataaacatttttcttcttcttc 14820590  T
Q  219 ttc 221  Q
    |||    
T  14820591 ttc 14820593  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 9989349 - 9989261
Alignment:
Q  29 ttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgc 117  Q
    |||||||||||||||||||||   | ||||||||||||||||||   ||||| ||||||    | |||||||||||||||| |||||||    
T  9989349 ttgtttgggtgaatgaaaagcgagtccaggaaactcagttttgagaccaaaacgccagttgtgctgaagctggtattcctagcttctgc 9989261  T

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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 32238936 - 32238748
Alignment:
Q  32 tttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaactca 131  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32238936 tttgggagaatgaaaagtgctttcagaaaactcagttttgatctcaaaacgacagtacaacagaagctggtattcctagcttctgcttttgtgaaactca 32238837  T
Q  132 gttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttcttc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  32238836 gttttgattacaatgacatgtatagttaccaatatacccatgttttctt-cccaatttcctatgaataaacatttttcttcttcttcttc 32238748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 54152258 - 54152456
Alignment:
Q  8 gttttcagatttttctttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcc 107  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||              |||||||||||| |||||||||    
T  54152258 gttttcagattttttttttt-ttgtttgggtgaatgaaaagtactttcaggaaactcagttttg--------------gtacaacagaagttggtattcc 54152342  T
Q  108 taacttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctt 207  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54152343 tagcttctgcttttgtgaaactcagttttgattacaatgacatatatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctt 54152442  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 14071766 - 14071959
Alignment:
Q  27 tcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaa 126  Q
    |||||||||| ||||||||||| | || ||||||||   ||||||||||||||| |||| |||||| ||||||| ||||| || ||||||||||||||||    
T  14071766 tcttgtttggctgaatgaaaagtaattccaggaaacgtggttttgatctcaaaacgccattacaactgaagctgatattcatagcttctgcttttgtgaa 14071865  T
Q  127 actcagttttgattacaatgacatgtatagttaccaatata--cccatgttttcttccccaatttcctatgaataaacatctttcttcttcttc 218  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  14071866 actcagttttgatttcaatgacatgtatagttaccaatatacccccatgttttcttctccaatttcctactagtaaacatctttcttcttcttc 14071959  T

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Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 33954748 - 33954541
Alignment:
Q  8 gttttcagatttttctttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcc 107  Q
    ||||||||||||||   | |||| ||||||||||||||||| |||| ||||||||   |||||||||||||||  ||| |||||| ||||||| ||| |     
T  33954748 gttttcagattttt---tatcttatttgggtgaatgaaaagtacttccaggaaacgtggttttgatctcaaaacaccattacaactgaagctgatatcca 33954652  T
Q  108 taacttctgcttttgtgaaactcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctt 207  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||    
T  33954651 tagcttctgcttttgtgaaactcagttttgatttcaatgacatgtatagttaccaatatacccatgttttcttcttcaatttcctactaataaacatctt 33954552  T
Q  208 tcttcttcttc 218  Q
    |||||||||||    
T  33954551 tcttcttcttc 33954541  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 2431108 - 2430946
Alignment:
Q  28 cttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgcttttgtgaaa 127  Q
    ||||||||| |||||||||||| ||| ||  ||||||||||||||   ||||| ||| ||||| |  |||| || ||||||| ||||||  |||||||||    
T  2431108 cttgtttggatgaatgaaaagcgcttccaa-aaactcagttttgagaccaaaacgccggtacagctaaagcaggaattcctagcttctgagtttgtgaaa 2431010  T
Q  128 ctcagttttgattacaatgacatgtatagttaccaatatacccatgttttcttccccaatttcc 191  Q
    ||| |||||||||  |||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  2431009 ctcggttttgatttaaatgacatctatagttaccaatatacccatcttttcttctccaatttcc 2430946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 40495941 - 40495862
Alignment:
Q  142 caatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaataaacatctttcttcttcttcttc 221  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |  ||||||||||||    
T  40495941 caatgacaagtatagttaccaatatacccatgttttcttctccaatttcccatgaataaacaacatctttcttcttcttc 40495862  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 41741438 - 41741389
Alignment:
Q  23 tttttcttgtttgggtgaatgaaaagcactttcaggaaactcagttttga 72  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||||||    
T  41741438 tttttcttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttga 41741389  T

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Target: scaffold0018 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 193204 - 193282
Alignment:
Q  143 aatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaata---aacatctttcttcttcttc 218  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||   |||||||||||||||||||    
T  193204 aatgacaagtataattaccaatatacccatgttttcttctccaatttcccatgaataaacaacatctttcttcttcttc 193282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 1554278 - 1554360
Alignment:
Q  142 caatgacatgtatagttaccaatatacccatgttttcttccccaatttcctatgaat---aaacatctttcttcttcttcttc 221  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||    ||||||||||||||||||||||    
T  1554278 caatgaaaagtatagttaccaatatacccatgttttcttctccaattttctatgaattaacaacatctttcttcttcttcttc 1554360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 37562000 - 37562088
Alignment:
Q  29 ttgtttgggtgaatgaaaagcactttcaggaaactcagttttgatctcaaaaagccagtacaacagaagctggtattcctaacttctgc 117  Q
    ||||||||||||||||||||  | | ||||||||||||||||||   ||||| ||||||    | |||| ||||||||||| |||||||    
T  37562000 ttgtttgggtgaatgaaaagagcgtccaggaaactcagttttgagaccaaaacgccagttgtgctgaagttggtattcctagcttctgc 37562088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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