View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177-Insertion-14 (Length: 272)
Name: NF3177-Insertion-14
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 13630374 - 13630548
Alignment:
| Q |
8 |
tgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtattaagactcaaaaagaatctgtggtaggacacaatgaaacaaatggtaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13630374 |
tgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtaataaggctcaaaaagaatctgtggtaggacacaatgaaacaaatggtaca |
13630473 |
T |
|
| Q |
108 |
cttgggaacaatgataagactaatggagttggtatactttctctctcccctatctctttccatctatatatatta |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13630474 |
cttgggaacaatgataagactaatggagttggtatactttctctctcccctgtctctttccatctatatatatta |
13630548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 13730786 - 13730960
Alignment:
| Q |
8 |
tgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtattaagactcaaaaagaatctgtggtaggacacaatgaaacaaatggtaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13730786 |
tgagagtgatgtggttcaagacatagagaaagggacacccaaagagagtaataaggctcaaaaagaatctgtggtaggacacaatgaaacaaatggtaca |
13730885 |
T |
|
| Q |
108 |
cttgggaacaatgataagactaatggagttggtatactttctctctcccctatctctttccatctatatatatta |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13730886 |
cttgggaacaatgataagactaatggagttggtatactttctctctcccctgtctctttccatctatatatatta |
13730960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University