View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3177-Insertion-3 (Length: 756)

Name: NF3177-Insertion-3
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3177-Insertion-3
NF3177-Insertion-3
[»] chr4 (2 HSPs)
chr4 (8-756)||(37404852-37405581)
chr4 (103-160)||(19959954-19960011)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 756
Target Start/End: Complemental strand, 37405581 - 37404852
Alignment:
Q  8 gattggacatttgaaacttgacccgagtgatccaaagttgatggcccaactgatgtcgaatatattctgaaattatcttaaaatttgtgttcaatctaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405581 gattggacatttgaaacttgacccgagtgatccaaagttgatggcccaactgatgtcgaatatattctgaaattatcttaaaatttgtgttcaatctaaa 37405482  T
Q  108 tcaaccatacaaaactggtttacaaagtaggggatgcctcctacttataaacatatttttaggtttctcgtgtaatttgtgactctcaatgtgatttgag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37405481 tcaaccatacaaaactggtttacaaagtaggggatgcctcctacttataaacatatttttatgtttctcgtgtaatttgtgactctcaacgtgatttgag 37405382  T
Q  208 ttcgattttgagaacaagatgctttaaatgtgactaaacttcaaacca-gaaattattgcataattatagcgaaaagttctagttacaaaggtttaaaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37405381 ttcgattttgagaacaagatgctttaaatgtgactaaacttcaaaccaagaaattattccataattatagcgaaaagttctagttacaaaggtttaaaaa 37405282  T
Q  307 tatggaatgcaagtgctcacttttaatatatcaatcaaggactataattgaagagatggagaaagtnnnnnnntgagtggaaaatcagaatatgtgtttt 406  Q
    ||||| ||||||||||||||||||||                     |||||||||||||||||||       |||||||||||||||||||||||||||    
T  37405281 tatgggatgcaagtgctcacttttaa---------------------ttgaagagatggagaaagtaaaaaaatgagtggaaaatcagaatatgtgtttt 37405203  T
Q  407 caatggtgtatcttatttgtgtctaagtgaaagatatgcttctgttcgatattcctcacaatttaaagaagcaagaaccagatacccttgacatttaata 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405202 caatggtgtatcttatttgtgtctaagtgaaagatatgcttctgttcgatattcctcacaatttaaagaagcaagaaccagatacccttgacatttaata 37405103  T
Q  507 tctttagttgctcgaaatgtattgttttcctttgtttttatacccaaaagattctaaagaagcctgccttccaacttggcttgattccttggattcaaag 606  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  37405102 tctttagttgctcaaaatgtattgttttcctttgtttttatacccaaaagattctaaagaagcatgccttacaacttggcttgattccttggattcaaag 37405003  T
Q  607 aatattagaagctttgccaaaatagaaatctgtccgggcgtggaacttttgtgacataagccggcaatgtgtcgtgttcaaggtcagatgtttctatgaa 706  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37405002 aatattagaagctttaccaaaatagaaatctgtccgggcgtggaacttttgtgacataagccggcaatgtgtcgtgttcaaggtcggatgtttctatgaa 37404903  T
Q  707 aggtagat-tttcccatctctttctctcatggaatcctcctctttttgtaa 756  Q
    ||||||||   |||||||||||||||||| |||||||||||||||||||||    
T  37404902 aggtagatgaatcccatctctttctctcaaggaatcctcctctttttgtaa 37404852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 19960011 - 19959954
Alignment:
Q  103 ctaaatcaaccatacaaaactggtttacaaagtaggggatgcctcctacttataaaca 160  Q
    |||| |||||||||||||||||| |||||| ||  ||||||| ||| |||||||||||    
T  19960011 ctaactcaaccatacaaaactggcttacaaggtgagggatgcttcccacttataaaca 19959954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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