View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3177-Insertion-4 (Length: 629)

Name: NF3177-Insertion-4
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3177-Insertion-4
NF3177-Insertion-4
[»] chr6 (11 HSPs)
chr6 (410-603)||(32672440-32672635)
chr6 (162-343)||(32672244-32672437)
chr6 (522-629)||(32708451-32708553)
chr6 (27-95)||(32671095-32671163)
chr6 (399-492)||(28601367-28601460)
chr6 (93-149)||(32672164-32672219)
chr6 (93-137)||(32670976-32671020)
chr6 (517-599)||(28601521-28601605)
chr6 (356-418)||(32703576-32703638)
chr6 (600-629)||(32672801-32672830)
chr6 (447-492)||(32708340-32708385)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 410 - 603
Target Start/End: Original strand, 32672440 - 32672635
Alignment:
Q  410 aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtggttcaattgtagtttatt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  32672440 aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaagaaagcagtgtggttcaattgtagtttact 32672539  T
Q  510 gtccaattgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataat 603  Q
    |||||||||||||||||||||||||||||||||| | |    ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  32672540 gtccaattgagcggtgaagatacttcccacattccagtaataccctcaggtttcacaattacttctgattgaaaccaacttgataacaataataat 32672635  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 162 - 343
Target Start/End: Original strand, 32672244 - 32672437
Alignment:
Q  162 ctcatgtaaggggatggaatgataatgaactatttattgtcaaaagtattaagannnnnnnnnnnatttactcagcccattggt--------------aa 247  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||           |||||||||||||||| ||              ||    
T  32672244 ctcatgtaaggggatggaatgatcatgaactatttattgtcaaaagtattaagattttttttt--atttactcagcccatttgttagttacggattataa 32672341  T
Q  248 aaaagttatcttaacattcaatcatttatgaattattttttagagatttttataaaaagcgtaattaattatgtttgtctaccttaatactttttt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32672342 aaaagttatcttaacattcaatcatttatgaattattttttagagatttttataaaaagcgtaattaattatgtttgtctaccataatactttttt 32672437  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 522 - 629
Target Start/End: Original strand, 32708451 - 32708553
Alignment:
Q  522 ggtgaagatacttcccacattcaattccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttattggtgagact 621  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32708451 ggtgaagatacttcccacattc-----cccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttattggtgagact 32708545  T
Q  622 gtccaaca 629  Q
    ||||||||    
T  32708546 gtccaaca 32708553  T

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Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 32671163 - 32671095
Alignment:
Q  27 atattatgtgagaaatattgtttgcatggaaaaggaaacaaacacatccaaacaagcacgcctaagaaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32671163 atattatgtgagaaatattgtttgcatggaaaaggaaacaaacacatccaaacaagcacgcctaagaaa 32671095  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 399 - 492
Target Start/End: Original strand, 28601367 - 28601460
Alignment:
Q  399 atttcgtttctaatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg 492  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||    
T  28601367 atttcgtttctaatgtatttttgtgaattttcaaatgtataggctttcaacacaagtcaaaacaacatgttgatacttcaagaaagctgtgtgg 28601460  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 32672164 - 32672219
Alignment:
Q  93 aaacatagatgatcaatattttagttactcttcacaactcatgtaaggggatttact 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32672164 aaacatagatgatcaatattt-agttactcttcacaactcatgtaaggggatttact 32672219  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 32671020 - 32670976
Alignment:
Q  93 aaacatagatgatcaatattttagttactcttcacaactcatgta 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32671020 aaacatagatgatcaatattttagttactcttcacaactcatgta 32670976  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 599
Target Start/End: Original strand, 28601521 - 28601605
Alignment:
Q  517 tgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataa 599  Q
    |||| |||||||||||||||||||||| | |  | ||||||  ||||||||| |||||||||||||||  |||||||||||||||    
T  28601521 tgagtggtgaagatacttcccacattccagtaacaccctcaggtttcacaatcacttctgatggaaacacacttgataacaataa 28601605  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 32703576 - 32703638
Alignment:
Q  356 tttcaaaagttgtaacaattagacccttgtttgccggattttcatttcgtttctaatatattt 418  Q
    ||||||||| | ||||||||| ||||||||| |||| ||||||||||| |||||||| |||||    
T  32703576 tttcaaaagctataacaattaaacccttgttcgccgaattttcatttcatttctaatgtattt 32703638  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 629
Target Start/End: Original strand, 32672801 - 32672830
Alignment:
Q  600 taatggacttattggtgagactgtccaaca 629  Q
    ||||||||||||||||||||||||||||||    
T  32672801 taatggacttattggtgagactgtccaaca 32672830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 492
Target Start/End: Original strand, 32708340 - 32708385
Alignment:
Q  447 aacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg 492  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  32708340 aacactagtcagaacaacatgttgatacttcaagaaagctgtgtgg 32708385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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