View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177-Insertion-5 (Length: 675)
Name: NF3177-Insertion-5
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-5 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: scaffold0035 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 7 - 675
Target Start/End: Original strand, 78364 - 79030
Alignment:
| Q |
7 |
actgaggtggaggttggaaaagagtacgagcttgtgatcacaacctacaccggattgaaccgttacagagttggtgacattctccgtgtcaccgggtttc |
106 |
Q |
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| T |
78364 |
actgaggtggaagttggaaaagagtatgagcttgtgatcacaacctacgccggattgaaccgttacagagttggtgacattctccgtgtcaccgggtttc |
78463 |
T |
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| Q |
107 |
ataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgattcggataaaacagatgagtcagagctacaaaaagccgtgga |
206 |
Q |
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| T |
78464 |
ataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgattcggataaaacagatgagtcagagctacaaaaagccgtgga |
78563 |
T |
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| Q |
207 |
gaatgcttcaaagttactttccgagtttaacacgagtgtggttgagtacacgagttacgcagacacggagaccataccgggtcattatgtgatatattgg |
306 |
Q |
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| T |
78564 |
gaatgcttcaaagttactatccgagtttaacacgagtgtggttgagtacacgagttacgcagacacggagaccataccgggtcattatgtgatatattgg |
78663 |
T |
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| Q |
307 |
gagttgttgacaaaagcagactccccgagtcatgaggtgttgaatatgtgttgtttggaaatggagcaatcgttgaattctgtttataggcaatgtaggg |
406 |
Q |
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| T |
78664 |
gagttgttgacaaaagcagactccccgagtcatgaggtgttgaatatgtgttgtttggaaatggagcaatcgttgaattctgtttataggcaatgtaggg |
78763 |
T |
|
| Q |
407 |
ttgctgatcattcaattggaccattggagataagggttgtgaagagtggaacttttgaggagcttatggattatgcaatctcaagaggtgcttcaataaa |
506 |
Q |
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| T |
78764 |
ttgctgatcattcaattggaccattggagataagggttgtgaagagtggaacttttgaggagcttatggattatgcaatctcaagaggtgcttcaataaa |
78863 |
T |
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| Q |
507 |
tcaatataaagttccaaggtgtgttaattttactcctataatggagcttttggactctagggtggtctctgttcactttagcccaagatttgccacattg |
606 |
Q |
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| T |
78864 |
tcaatataaagttccaaggtgtgttaattttactcctataatggagcttttggactctagggtggtctctgttcactttag-ccaagatttgccacattg |
78962 |
T |
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| Q |
607 |
gacccctgaaaggatacggtgatttaatagattaattttgacatttgagcttattggggtagctttaga |
675 |
Q |
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| T |
78963 |
gacccctgaaaggatacgttgatttaatagattaattttgacatttgagcttatt-gggtagctttaga |
79030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 338 - 587
Target Start/End: Complemental strand, 5832105 - 5831856
Alignment:
| Q |
338 |
atgaggtgttgaatatgtgttgtttggaaatggagcaatcgttgaattctgtttataggcaatgtagggttgctgatcattcaattggaccattggagat |
437 |
Q |
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| T |
5832105 |
atgaagtgttgaatcaatgttgtttggttatggaagagtctttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagat |
5832006 |
T |
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| Q |
438 |
aagggttgtgaagagtggaacttttgaggagcttatggattatgcaatctcaagaggtgcttcaataaatcaatataaagttccaaggtgtgttaatttt |
537 |
Q |
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| T |
5832005 |
tcgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgcaagtatcaatcagtataaagttcctaggtgcgtgagtttc |
5831906 |
T |
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| Q |
538 |
actcctataatggagcttttggactctagggtggtctctgttcactttag |
587 |
Q |
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| T |
5831905 |
actcctataatggaacttcttgactctagggtggtatcagttcattttag |
5831856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 5823657 - 5823790
Alignment:
| Q |
67 |
cgttacagagttggtgacattctccgtgtcaccgggtttcataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgatt |
166 |
Q |
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| T |
5823657 |
cgttacaaagttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaacgtgctgttgagtatcgatt |
5823756 |
T |
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| Q |
167 |
cggataaaacagatgagtcagagctacaaaaagc |
200 |
Q |
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| T |
5823757 |
cggataaaacagacgaatcggagcttcaaaaagc |
5823790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 5823934 - 5824033
Alignment:
| Q |
338 |
atgaggtgttgaatatgtgttgtttggaaatggagcaatcgttgaattctgtttataggcaatgtagggttgctgatcattcaattggaccattggagat |
437 |
Q |
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| T |
5823934 |
atgaagtgttgaatcaatgttgtttggttatggaagagtctttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagat |
5824033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 5832310 - 5832249
Alignment:
| Q |
139 |
cgaaagaatgtgttgcttagtattgattcggataaaacagatgagtcagagctacaaaaagc |
200 |
Q |
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| T |
5832310 |
cgaaagaacgtgttgttgagtatcgattcggataaaacagacgaatcggagcttcaaaaagc |
5832249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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