View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177-Insertion-7 (Length: 536)
Name: NF3177-Insertion-7
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-7 |
 | |
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| [»] chr8 (1 HSPs) |
| |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Complemental strand, 26794772 - 26794243
Alignment:
| Q |
7 |
aatttcttgaagacaaatacttaataactcatggtgataaagagagtttgatgcaagaggctattgaaaaagctgcgggagatggaattgttcacttgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26794772 |
aatttcttgaagacaaatacttaataactcatggtgataaagagagtttgatgcaagaggctattgaaaaagctgcgggagatggaattgttcacttgat |
26794673 |
T |
|
| Q |
107 |
tggtgaaagtgaggtgattgctagcaaaggaagtggcataataaagaggattctgatagattatgcttatgattttgtgaaaagaaacttgaggcagggt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794672 |
tggtgaaagtgaggtgattgctagcaaaggaagtggcataataaagaggattctgatagattatgcttatgattttgtgaaaagaaacttgaggcagggt |
26794573 |
T |
|
| Q |
207 |
aataaagtgtttgatattcctcataaacgtatggtcaaggttggaatgatttatcaactttaaacaactaaataaatggttcaatagtaaatacaataag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26794572 |
aataaagtgtttgatattcctcataaacgtatggtcaaggttggaatgatttatcaactttaaacaactaaataaatggttcaatagtaaataaaataag |
26794473 |
T |
|
| Q |
307 |
agatcgattcagaagagaatcagaataatgatgaaccgtatgttaaaacagttgttaagaaataattcataattgccacctaagctggttagttaagatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
26794472 |
agatcgattcagaagagaatcagaataatgatgaaccgtatgttaaaagagttgttaagaaatgattcataattgtcacctaagctggttagttaagatt |
26794373 |
T |
|
| Q |
407 |
ttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattcacttcttaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26794372 |
ttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaaggctttgtaatgtgtacattcacttcttaat |
26794273 |
T |
|
| Q |
507 |
gagattcacattgcaagcataatctctcta |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26794272 |
gagattcacattgcaagcataatctctcta |
26794243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 359 - 536
Target Start/End: Original strand, 14234049 - 14234219
Alignment:
| Q |
359 |
tgttaagaaataattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgtt |
458 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
14234049 |
tgttaagaaataattcataactgccacctaagctagttagttaagaatttgttacaaaactagttagttagggaattagcttgttcaacaagcaagtgtt |
14234148 |
T |
|
| Q |
459 |
agttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataatctctcta |
536 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
14234149 |
agtt-------tataaaggctttgtaatgtgtacattcacttcttaatgagattcaaattgcaagcataatgtctcta |
14234219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 359 - 536
Target Start/End: Original strand, 11494060 - 11494237
Alignment:
| Q |
359 |
tgttaagaaataattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgtt |
458 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| | ||| ||| |||| |||||||||||| || |
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|
| T |
11494060 |
tgttaagagttaattcataactgccagctaagctagttagttaagaatttgttacaaaactagttagtttgtgagatagtttgtgctacaagcaagtatt |
11494159 |
T |
|
| Q |
459 |
agttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataatctctcta |
536 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
11494160 |
agttttgcctatatataggctttgtaatgtgtacattcacttcttaatgagattcgcattgcaagtatactctctcta |
11494237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 359 - 527
Target Start/End: Original strand, 9881225 - 9881393
Alignment:
| Q |
359 |
tgttaagaaataattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgtt |
458 |
Q |
| |
|
|||||||||||||||||||| || ||| || | ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
9881225 |
tgttaagaaataattcataactgtcacgtagacaagttagttgagaatttgttacaaaactagttagttatggagttagcttgttctacaagaaagtgtt |
9881324 |
T |
|
| Q |
459 |
agttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcata |
527 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
9881325 |
agttttgcctatataacggctttgtaatgtgtacattcactacttaatgagattcacattgtaagcata |
9881393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 516
Target Start/End: Complemental strand, 28964917 - 28964807
Alignment:
| Q |
405 |
ttttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattcacttctta |
504 |
Q |
| |
|
|||| |||||||| | ||| ||||| || |||||||| ||||||||||||||| ||||| |||| |||| ||||||||||||| |||||| |||||| |
|
|
| T |
28964917 |
ttttcttacaaaatttgtttgttagttagatagcttgtactacaagcaagtgttgtatttgcttata-aaaggctttgtaatgtgtgcattcaattctta |
28964819 |
T |
|
| Q |
505 |
atgagattcaca |
516 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28964818 |
atgagattcaca |
28964807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 534
Target Start/End: Complemental strand, 7043447 - 7043333
Alignment:
| Q |
421 |
gttagttagggagttagcttgttctacaagcaagtgt--tagttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacatt |
518 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| || | | |||||| |||| || |||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
7043447 |
gttagttagttagatagcttgtgctacaagcaagtgtgatatatatacctata-aaaggctatgtaatgtgtacattcacaacttaatgagattcatatt |
7043349 |
T |
|
| Q |
519 |
gcaagcataatctctc |
534 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
7043348 |
acaagcaaactctctc |
7043333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 364 - 536
Target Start/End: Complemental strand, 25590894 - 25590720
Alignment:
| Q |
364 |
agaaataattcataattgccacct-aagctggttagttaagattttgttacaaaa-ctagttagttagggagttagcttgttctacaagcaagtgttagt |
461 |
Q |
| |
|
||||||||||||||| |||||||| || || ||||||||||| ||||||| |||| |||||||||||| ||| ||| || | ||||||||||||||||| |
|
|
| T |
25590894 |
agaaataattcataactgccaccttaacctagttagttaagaatttgttaaaaaaactagttagttagtgagataggttatgttacaagcaagtgttagt |
25590795 |
T |
|
| Q |
462 |
tttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataatctctcta |
536 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25590794 |
tttgcttatataaaggctttgtaacgtgtacattcacttcttaatgagattcacattgcaagcataatctctcta |
25590720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 512
Target Start/End: Original strand, 51119452 - 51119573
Alignment:
| Q |
394 |
gttagttaagattttgttacaaaac----tagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtg |
489 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||| ||||| |||| |||| |||||||||||| |
|
|
| T |
51119452 |
gttagttagaattttgttacaaaacgtgttagttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgtg |
51119550 |
T |
|
| Q |
490 |
tacattcacttcttaatgagatt |
512 |
Q |
| |
|
|||||| | |||||||||||||| |
|
|
| T |
51119551 |
tacatttaattcttaatgagatt |
51119573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 359 - 534
Target Start/End: Original strand, 6962072 - 6962240
Alignment:
| Q |
359 |
tgttaagaaataattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgtt |
458 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
6962072 |
tgttaagaaataattcataactgccacctaagttagttagttgaaattttgttacaaaactagttagttaggaagtcatcttgttctacaagcaagtgtt |
6962171 |
T |
|
| Q |
459 |
agttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataatctctc |
534 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
6962172 |
aattttgcctatataaaggctttgtaatgtgtaca---ac----taatgagattcacattgcaagcataatttctc |
6962240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 12635161 - 12635251
Alignment:
| Q |
405 |
ttttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattc |
496 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| || ||| | |||||||||||||||| ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
12635161 |
tttttttacaaaacttgttagttagtgagataacttatgctacaagcaagtgttatattttcctata-aaaggctttgtaatgtgtacattc |
12635251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 369 - 529
Target Start/End: Original strand, 51810511 - 51810671
Alignment:
| Q |
369 |
taattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcct |
468 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||| || |||||||||||||||| | || ||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
51810511 |
taattcatgactgccacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaaatgttagttttgcct |
51810610 |
T |
|
| Q |
469 |
atataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataat |
529 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||| | |||||||||||||||||||||||| |
|
|
| T |
51810611 |
atataaaggctttgtaatgtataaattcacttctcattgagattcacattgcaagcataat |
51810671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 516
Target Start/End: Original strand, 1663332 - 1663412
Alignment:
| Q |
435 |
tagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcaca |
516 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||| |||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1663332 |
tagcttgtgctacaaacaagtgttatatttgcctatg-aaagtctttgtaaggtgtacattcaattcttaatgagattcaca |
1663412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 8265812 - 8265942
Alignment:
| Q |
359 |
tgttaagaaataattcataattgccacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgtt |
458 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8265812 |
tgttaagaattaattcataactgccacctaagcaagttagttgagattttgttagaaaactagttagttaggaagttagcttgttctacaagaaagtgtt |
8265911 |
T |
|
| Q |
459 |
agttttgcctatataaagactttgtaatgtg |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
8265912 |
agttttgcctatataaaggctttgtaatgtg |
8265942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 44177627 - 44177461
Alignment:
| Q |
94 |
ttgttcacttgattggtgaaagtgaggtgattgctagcaaaggaagtggcataataaagaggattctgatagattatgcttatgattttgtgaaaagaaa |
193 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||| || ||| |||||| ||| |||| ||||||||||| |||| |||| | ||| |
|
|
| T |
44177627 |
ttgttcacttgattggtgaaaatgaggtgattgctggtaaaggagctgacattggaaagagaattttgattgattatgcttaccatttcttgaagaaaaa |
44177528 |
T |
|
| Q |
194 |
cttgaggcagggtaataaagtgtttgatattcctcataaacgtatggtcaaggttggaatgatttat |
260 |
Q |
| |
|
||||||||| || | ||| | |||||||||||||||||||||||||| || || ||||||| |||| |
|
|
| T |
44177527 |
tttgaggcagagtgaaaaattatttgatattcctcataaacgtatggttaaagtgggaatgacttat |
44177461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 421 - 526
Target Start/End: Complemental strand, 29010927 - 29010823
Alignment:
| Q |
421 |
gttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgc |
520 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| | | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29010927 |
gttagttagtgagatagcttgtgctacaagcaagcatcatatttgcctata-aaaggctttgtaatgtgtacattcacttcttaatgagattcacattgc |
29010829 |
T |
|
| Q |
521 |
aagcat |
526 |
Q |
| |
|
|||||| |
|
|
| T |
29010828 |
aagcat |
29010823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 536
Target Start/End: Complemental strand, 59564 - 59465
Alignment:
| Q |
435 |
tagcttgttctacaagcaagtgttagttttgcctatataaagactttgtaatgtgtacattcacttcttaatgagattcacattgcaagcataatctctc |
534 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| |||| ||||||| |||| | |||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
59564 |
tagcttgttctacaagcaagtgcca-ttgtgcctata-aaaggctttgtattgtgcaacttcaagtcttaatgagattcacattgcaagcataatcactc |
59467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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