View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177-Insertion-9 (Length: 419)
Name: NF3177-Insertion-9
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 52771045 - 52771456
Alignment:
| Q |
8 |
actggtcccatcccaggggagaaaaaagctatatacagtatcaaacccaaaactgcaagccatccggtagcatttgatgctgctgctgaggtttgatttg |
107 |
Q |
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| T |
52771045 |
actggtcccatcccaggggagaaaaaagctatatacagtatcaaacccaaaactgcaagccatccggtagcatttgatgctgctgccgaggtttgatttg |
52771144 |
T |
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| Q |
108 |
agaatgccacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaag |
207 |
Q |
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| T |
52771145 |
agaatgccacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaag |
52771244 |
T |
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| Q |
208 |
aacagttccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtag |
307 |
Q |
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| T |
52771245 |
aacagttccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtag |
52771344 |
T |
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| Q |
308 |
tacatcactgtgttaatgccagtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaa |
407 |
Q |
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| T |
52771345 |
tacatcactgtgttaatgccagtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaa |
52771444 |
T |
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| Q |
408 |
atttgacattca |
419 |
Q |
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| T |
52771445 |
atttgacattca |
52771456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 52767225 - 52767403
Alignment:
| Q |
143 |
actcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaaga |
242 |
Q |
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| T |
52767225 |
actcctcctaagctatacagggctaattttttccgtcctgcatggtcaataaggtaaataccaagaactgttccggcagcattcaagccagcaactatga |
52767324 |
T |
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| Q |
243 |
gtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgtt |
321 |
Q |
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| T |
52767325 |
gagagagttgaagagccaactcattagagtgaaagccagccatttggacaattgttggactgtagtacatcactgtgtt |
52767403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 336
Target Start/End: Complemental strand, 392587 - 392439
Alignment:
| Q |
188 |
tcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccattt |
287 |
Q |
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||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | ||| || | |||||||||||| || | || || |||||||||| |
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| T |
392587 |
tcaataaggtaaatgccaagaattgttccgacagcgttcatgccagcaactatgagggacagaagaagagccaactgattggcatggaagccagccattt |
392488 |
T |
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| Q |
288 |
gaacaatggttggactgtagtacatcactgtgttaatgccagtaaactg |
336 |
Q |
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| T |
392487 |
gaacaatggttggactgtagtacatcaccgtgtttatacctgtaaactg |
392439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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