View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177_high_10 (Length: 264)
Name: NF3177_high_10
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 47124552 - 47124319
Alignment:
| Q |
17 |
atgaatccaatctttttgtaagacatcgaatcaaaatcacacaatctaattggtccaagtcatcatataatctcatccacatcaacaacactcttccaaa |
116 |
Q |
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| T |
47124552 |
atgaatccaatctttttgtaagacatcgaatcaaaatcacacaatctaattggtccaagtcatcatataatctcatccacatcaacaacactcttccaaa |
47124453 |
T |
|
| Q |
117 |
atcattaacttacaaactagtacta--gtgatattgatctttcacaagcccaacacactttcctcgcaatactacaagcaacatttgtatccaactcaca |
214 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124452 |
atcattaacttacaaactagtactagtgtgatattgatctttcacaagcccaacacactttcctcgcaatactacaagcaacatttgtatccaactcaca |
47124353 |
T |
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| Q |
215 |
atggccatggcaactcaaaccaccctcttcaccc |
248 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47124352 |
atggccatggcaactcaaaccaccctcttcaccc |
47124319 |
T |
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