View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177_high_5 (Length: 369)
Name: NF3177_high_5
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 14215163 - 14215496
Alignment:
| Q |
13 |
tgagagggaaaaactggaaaaggttggaaacttttacactatactactcaaattcacgtgtgttttttctttccttttacgtttcattgccaacctaaca |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14215163 |
tgagagggaaaaattggaaaaggttggaaacttttacactatactgctcaaattcacgtgtgctttttctttccttttacgtttcattgccaacctaaca |
14215262 |
T |
|
| Q |
113 |
caatgctaaatgttcatacatacttttgtttataaatgtagtgagtatgtgtataattagcttgtgagctgtgactagtgtcattcatatatcatgtgct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
14215263 |
caatgctaaatgttcatacatacttttgtttataaatgtagtgagtatgtgtataattagcttgtgagttgtgacta--gtcattcagatatcatgtgct |
14215360 |
T |
|
| Q |
213 |
gtggaaaatggacagaaattagaggaaataaatgtaatctagtacactccaaaaattgtttagaaaatcacgttgtcgtttcaggatatagttatgatat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14215361 |
gtggaaaatggacagaaattagaggaaataaatgtaatctagtacactccaaaaattgtttagaaaatcacgttgtcgtttcaggatatagttatgatat |
14215460 |
T |
|
| Q |
313 |
tttatttatttacattacacgtccactagttgtttgtttc |
352 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
14215461 |
t---tttattta-tttacacgtccactagttgtttgtttc |
14215496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University