View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177_high_6 (Length: 344)
Name: NF3177_high_6
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 42178491 - 42178175
Alignment:
| Q |
18 |
gccttgaagaatatctctcaattttt-acacctaagcttgctatgacgttaatttgagtggtgcatttt-gtttcatgagcggttctatatggcatgata |
115 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42178491 |
gccttgaagaatatctcacaattttttacacctaagcttgctatgacgttaatttgagaggtgcatttttgtttcatgagcggttctatatggcatgata |
42178392 |
T |
|
| Q |
116 |
ctctatcacacaaattgcacatgacatgaatgtgttttccatgcttgttttgcttgtctcatgaatgtgcttatgcttcttatcttatctcatttatata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42178391 |
ctctatcacacaaattgcacatgacatgagtgtgttttccatgcttgttttgcttgtctcatgaatgtgcttatgcttcttatcttatctcatttatata |
42178292 |
T |
|
| Q |
216 |
aagttaaaataaaaatatcttacaaaacaaattacaaatatgtgttcactgatatggacgatatacaaatatgagatgttggtagtgtttagaaactata |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42178291 |
aatttaaaataaaaatatcttacaaaacaaattacaaatatgtgttcactgatatggacgatatacaaatatgagatgttggtagtgtttagaaactata |
42178192 |
T |
|
| Q |
316 |
atcaagtgaagtgtctg |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42178191 |
atcaagtgaagtgtctg |
42178175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University