View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3177_low_10 (Length: 285)

Name: NF3177_low_10
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3177_low_10
NF3177_low_10
[»] chr3 (4 HSPs)
chr3 (120-269)||(15773429-15773578)
chr3 (46-123)||(15773321-15773399)
chr3 (49-100)||(32462535-32462586)
chr3 (31-94)||(39914364-39914427)
[»] chr6 (2 HSPs)
chr6 (31-97)||(5832007-5832073)
chr6 (29-100)||(2843665-2843737)
[»] chr5 (2 HSPs)
chr5 (31-100)||(27502012-27502082)
chr5 (31-98)||(3295323-3295391)
[»] chr7 (1 HSPs)
chr7 (31-99)||(1085593-1085662)
[»] chr8 (1 HSPs)
chr8 (31-99)||(6732007-6732074)
[»] chr4 (1 HSPs)
chr4 (31-99)||(51768035-51768104)
[»] chr1 (1 HSPs)
chr1 (31-100)||(5319942-5320011)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 15773429 - 15773578
Alignment:
Q  120 tacaattatatcttcctaaagtgatgtaataaaatagtgtcattatcaagcatcatactttttctgaattcactcgaagctaggcactatatatgtcttg 219  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15773429 tacaattattttttcctaaagtgatgtaataaaatagtgtcattatcaagcatcatactttttctgaattcactcgaagctaggcaatatatatgtcttg 15773528  T
Q  220 cgtgctttcctttattttacgaagttcactagaaagagctaagtgagtat 269  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  15773529 cgtgcttttctttattttacgaagttcactagaaagaggtaagtgagtat 15773578  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 15773321 - 15773399
Alignment:
Q  46 tggttgttctaacctcgatgtagacgaccc-cctaactcccctcatgacccaacaagtatacacttttaaaacgataca 123  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||  |||||| ||||||||    
T  15773321 tggttgttctaacctcgatgtggacgatcctcctaactcccctcatgatccaacaagtatactattttaagacgataca 15773399  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 32462586 - 32462535
Alignment:
Q  49 ttgttctaacctcgatgtagacgaccccctaactcccctcatgacccaacaa 100  Q
    ||||| || |||||||||||||| ||||| |||||||||||||| |||||||    
T  32462586 ttgttttagcctcgatgtagacggcccccaaactcccctcatgatccaacaa 32462535  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 39914364 - 39914427
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagacgaccccctaactcccctcatgacc 94  Q
    ||||||| ||||||  |||||||||| |||||||||||||  |||||||||| | |||||||||    
T  39914364 tctctctcacttatgcggttgttctagcctcgatgtagacagccccctaacttcactcatgacc 39914427  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 5832073 - 5832007
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagacgaccccctaactcccctcatgacccaa 97  Q
    |||||||||||| | ||||||||||| ||||||||||||||  ||||   |||||||||||||||||    
T  5832073 tctctcttacttgtgtggttgttctagcctcgatgtagacggtccccaggctcccctcatgacccaa 5832007  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 2843665 - 2843737
Alignment:
Q  29 tatctctcttacttatttggttgttctaacctcgatgtagacga-ccccctaactcccctcatgacccaacaa 100  Q
    |||||||||| |||   ||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||    
T  2843665 tatctctcttgcttgagtggttgttctagcctcgatgtggacggtccccctaactcccctcatgatccaacaa 2843737  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 27502082 - 27502012
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagacga-ccccctaactcccctcatgacccaacaa 100  Q
    |||||||| ||| | ||||||||||| ||||||||| ||||  ||||||| ||||||||||||||||||||    
T  27502082 tctctcttgcttgtgtggttgttctatcctcgatgtggacggtccccctagctcccctcatgacccaacaa 27502012  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 3295391 - 3295323
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagac-gaccccctaactcccctcatgacccaac 98  Q
    |||||||| ||| | ||||||||||| ||||||||| ||| | |||||| ||||||||||||| |||||    
T  3295391 tctctcttgcttgtgtggttgttctagcctcgatgtggacggtccccctcactcccctcatgatccaac 3295323  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 1085662 - 1085593
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagac-gaccccctaactcccctcatgacccaaca 99  Q
    |||||||||||| | ||||||||||| ||||||||| ||| | ||||||  |||||||||||||||||||    
T  1085662 tctctcttacttgtgtggttgttctagcctcgatgtggacggtccccctggctcccctcatgacccaaca 1085593  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 6732007 - 6732074
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagacgaccccctaactcccctcatgacccaaca 99  Q
    |||||||| |||||  |||||||||||||||||||| || || |||||||||||||  |||||||||||    
T  6732007 tctctcttgcttatgcggttgttctaacctcgatgtggatgatcccctaactcccc-aatgacccaaca 6732074  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 51768104 - 51768035
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagac-gaccccctaactcccctcatgacccaaca 99  Q
    ||||||||||||||  | |||||||||||||||||| ||| | | ||| |||| ||||||||||||||||    
T  51768104 tctctcttacttatgggattgttctaacctcgatgtggacggtctcccaaacttccctcatgacccaaca 51768035  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 5320011 - 5319942
Alignment:
Q  31 tctctcttacttatttggttgttctaacctcgatgtagacgaccccctaactcccctcatgacccaacaa 100  Q
    |||||||| ||||| ||||||||||| |||| |||||||||  |||| | ||||| || |||||||||||    
T  5320011 tctctcttgcttatgtggttgttctagcctcaatgtagacggtccccaagctcccttcgtgacccaacaa 5319942  T

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