View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177_low_6 (Length: 356)
Name: NF3177_low_6
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 40208006 - 40207664
Alignment:
| Q |
1 |
tctttatatatattcacagagaagaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208006 |
tctttatatatattcacagagaagaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgat |
40207907 |
T |
|
| Q |
101 |
aacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207906 |
aacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagc |
40207807 |
T |
|
| Q |
201 |
tagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207806 |
tagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtc |
40207707 |
T |
|
| Q |
301 |
gagtatgcaaacaaaataaaagacaatacttaattaccggttc |
343 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40207706 |
gagtatgcaaacaaaataaaagtcaatacttaattaccggttc |
40207664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 40199664 - 40199384
Alignment:
| Q |
24 |
gaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggca |
123 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
40199664 |
gaatttaccaagattggaatgaacagcatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcgcatagaagaatggaa |
40199565 |
T |
|
| Q |
124 |
gtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagacccta |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
40199564 |
gtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagacccta |
40199465 |
T |
|
| Q |
224 |
ccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
40199464 |
ccacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 40203827 - 40203555
Alignment:
| Q |
24 |
gaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| |
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| T |
40203827 |
gaatttaccaagattggaatgaacaacatccatgtaagtatagtttctcttgccactgataggatcaccagtacgataacattcacagagaagaatggag |
40203728 |
T |
|
| Q |
124 |
gtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagacccta |
223 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40203727 |
gtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagacccta |
40203628 |
T |
|
| Q |
224 |
ccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
40203627 |
tcacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 10299650 - 10299851
Alignment:
| Q |
56 |
tgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcat |
155 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||||||||| || |||||||| ||| |||||||||||||| | | || |||| ||| |
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| T |
10299650 |
tgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcat |
10299749 |
T |
|
| Q |
156 |
aacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtc |
255 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||| |
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| T |
10299750 |
cattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtc |
10299849 |
T |
|
| Q |
256 |
ca |
257 |
Q |
| |
|
|| |
|
|
| T |
10299850 |
ca |
10299851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
162 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
261 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
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| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
262 |
gttcctg |
268 |
Q |
| |
|
|||||| |
|
|
| T |
39429274 |
cttcctg |
39429280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
162 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
261 |
Q |
| |
|
||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
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| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
|
| Q |
262 |
gttcc |
266 |
Q |
| |
|
|||| |
|
|
| T |
6249334 |
cttcc |
6249330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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