View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3177_low_8 (Length: 313)
Name: NF3177_low_8
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 13007082 - 13007371
Alignment:
| Q |
18 |
atagggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007082 |
atagggtgacctgccaccacctttatgtgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttc |
13007181 |
T |
|
| Q |
118 |
taggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007182 |
taggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttc |
13007281 |
T |
|
| Q |
218 |
tccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
13007282 |
tccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatc |
13007371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 13100883 - 13101177
Alignment:
| Q |
18 |
atagggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttc |
117 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13100883 |
atagggtgaccttccaccacctgtatgtgaaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttc |
13100982 |
T |
|
| Q |
118 |
taggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttc |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13100983 |
taggtcctg-attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttc |
13101081 |
T |
|
| Q |
218 |
tccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||| | | | ||||||||| |||||||| ||||| |
|
|
| T |
13101082 |
tccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaacgctctccactaggaagtatatcggattt |
13101177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 13094283 - 13094576
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || || |||||| |||| |
|
|
| T |
13094283 |
agggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaattctg |
13094382 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094383 |
ggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctc |
13094482 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13094483 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggagtaacatggtatccactaggtagtatatcagattt |
13094576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 13129712 - 13130005
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| || || |||||| |||| |
|
|
| T |
13129712 |
agggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctg |
13129811 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||| | ||| ||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129812 |
ggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctc |
13129911 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129912 |
cccatatttgttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
13130005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 30368416 - 30368123
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||| |||||| |||||||| |||||||||||||||| ||| |||| ||| || ||||||||||||||| |
|
|
| T |
30368416 |
agggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttcta |
30368317 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30368316 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatcttctc |
30368217 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
30368216 |
cccatattttttccatccttcccatagcatacaaagagtaaattaacttggtatttggactaacattctctccactaggtagtatatcagattt |
30368123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 13070484 - 13070191
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| || |||| ||||||||| |
|
|
| T |
13070484 |
agggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctc |
13070385 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070384 |
ggacctgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctc |
13070285 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||| | | |||||||||||||||||| ||||| |
|
|
| T |
13070284 |
cccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggattt |
13070191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 13204343 - 13204636
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| |||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||| || |||| |||||||||| |
|
|
| T |
13204343 |
agggtgaccttccactatctttatgtgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttcta |
13204442 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13204443 |
ggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctc |
13204542 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||| | | |||||||||||||||||| ||||| |
|
|
| T |
13204543 |
cccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggattt |
13204636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 13161407 - 13161698
Alignment:
| Q |
22 |
ggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctagg |
121 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| || || |||||| |||| || |
|
|
| T |
13161407 |
ggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctggg |
13161506 |
T |
|
| Q |
122 |
tcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccc |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||||| | ||| ||||| || | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13161507 |
tcctgtgttgaaagatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttccccc |
13161606 |
T |
|
| Q |
222 |
catatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||| | | | |||||||||||||||||| ||||| |
|
|
| T |
13161607 |
catagttgttccatcctgcccatagaatacatagagtacattaaacttgtatttggactaatacgttctccactaggtagtatatcggattt |
13161698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 13244829 - 13244536
Alignment:
| Q |
20 |
agggtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttcta |
119 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||| |||||||| |||||| ||||| |||||||||| |||||||| ||| || || |||||||||||| |
|
|
| T |
13244829 |
agggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttcta |
13244730 |
T |
|
| Q |
120 |
ggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctc |
219 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| ||||||| |||||| |||||| |||| | |||||| |||||||||||||||| ||| || |||| |
|
|
| T |
13244729 |
ggacctgcattgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctc |
13244630 |
T |
|
| Q |
220 |
cccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||| || || || |||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
13244629 |
cccatatttgttgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagattt |
13244536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 12964180 - 12963890
Alignment:
| Q |
23 |
gtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggt |
122 |
Q |
| |
|
||||||| ||||||| | |||||||||||| |||| | ||| || ||||| |||||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
12964180 |
gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga |
12964081 |
T |
|
| Q |
123 |
cctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccc |
222 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||| || |||||||| | |||||| | ||| | |||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
12964080 |
cctgcattgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctcccc |
12963981 |
T |
|
| Q |
223 |
atatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| || || || ||||||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
12963980 |
atatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggtaatatatctgattt |
12963890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 13271474 - 13271760
Alignment:
| Q |
24 |
tgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtc |
123 |
Q |
| |
|
|||||| ||||||| | |||||||||||| ||| | || |||||| ||||| ||||||||||| ||||||||||| || || | ||| |||||||| | |
|
|
| T |
13271474 |
tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac |
13271573 |
T |
|
| Q |
124 |
ctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccca |
223 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||| |||||| | ||||| | |||||||||||||||||| |||| ||| || | ||||| |
|
|
| T |
13271574 |
ctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactccaagcaatcaccacccca |
13271673 |
T |
|
| Q |
224 |
tatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcaga |
310 |
Q |
| |
|
|| |||||||| |||||||| | |||||||||||| ||||| |||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
13271674 |
tacatgttccattcttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcaga |
13271760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 13065468 - 13065232
Alignment:
| Q |
73 |
ccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcc |
172 |
Q |
| |
|
|||||||||||| || |||| | ||||| || |||| ||||||||| || |||| |||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13065468 |
ccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatgaacttgtaagacggtacatgtataatttgtcc |
13065369 |
T |
|
| Q |
173 |
tctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgta |
272 |
Q |
| |
|
|| | ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| | || ||||| |
|
|
| T |
13065368 |
gctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatattttctccatccttcccattgaatacaaatagtataatatccttgta |
13065269 |
T |
|
| Q |
273 |
tttggactaacatggtatccactaggtagtatatcag |
309 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
13065268 |
tttggacttacatggactccactaggaagtatatcag |
13065232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 19279473 - 19279189
Alignment:
| Q |
23 |
gtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggt |
122 |
Q |
| |
|
||||||| |||| |||| |||| ||||||| ||| | ||||||||| ||||| |||||||||| ||| ||||||| || || | ||| ||||| || |
|
|
| T |
19279473 |
gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga |
19279374 |
T |
|
| Q |
123 |
cctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccc |
222 |
Q |
| |
|
|||| ||| || |||||||||||||| ||||||||||||||||| |||||||| || || | ||||||||||||| |||||| | ||| || || |||| |
|
|
| T |
19279373 |
cctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcacccc |
19279274 |
T |
|
| Q |
223 |
atatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatc |
307 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
19279273 |
atatttgttccatccttcccattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggtagtatatc |
19279189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 13081170 - 13080880
Alignment:
| Q |
23 |
gtgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggt |
122 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||| | |||||||| ||||| |||||||||| || |||||||| || || | ||| ||||| || |
|
|
| T |
13081170 |
gtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttgga |
13081071 |
T |
|
| Q |
123 |
cctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccc |
222 |
Q |
| |
|
|||| ||| || ||||||||||| ||||| || || |||||||| |||||||| ||||| | |||||||||||||||||| |||| ||| || ||||||| |
|
|
| T |
13081070 |
cctgcattaaacgctatgaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctcccc |
13080971 |
T |
|
| Q |
223 |
atatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcagattt |
313 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||| || ||||| ||||||||||||||||||||| ||||||||| ||| |||| ||||| |
|
|
| T |
13080970 |
atatttgctccatccttcccattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtttatccgattt |
13080880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 13085995 - 13086280
Alignment:
| Q |
24 |
tgacctgccaccacctttatgtgaaactttggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtc |
123 |
Q |
| |
|
|||||| |||| || | |||||||||||| ||||| ||||||||| ||||| |||||||||| | ||||||||| || || | |||||||| ||| | |
|
|
| T |
13085995 |
tgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggac |
13086094 |
T |
|
| Q |
124 |
ctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccca |
223 |
Q |
| |
|
||| ||| || |||||||||||| ||||||||||||| | ||| |||||| | ||||| | ||||||||| ||||||||||| | || || | ||||| |
|
|
| T |
13086095 |
ctgcattaaatgctatgaacttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattcgaagcgatccttacccca |
13086194 |
T |
|
| Q |
224 |
tatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggactaacatggtatccactaggtagtatatcag |
309 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||| ||||| | |||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
13086195 |
tatttgtttcatccttcccattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcag |
13086280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 13010693 - 13010747
Alignment:
| Q |
56 |
taacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttgcccata |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| |||| ||| | ||||||| |
|
|
| T |
13010693 |
taacaaatcagctgcgaccatcttcattagaatgaaactaagatcttcgcccata |
13010747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 36668061 - 36668230
Alignment:
| Q |
72 |
accatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtc |
171 |
Q |
| |
|
|||||||||| | ||||||||| |||||||| |||| || ||| || ||||| | ||||||||| |||||||||||||| |||||||| || | || |
|
|
| T |
36668061 |
accatcttcaactcaatgaagcttatatccttacccaaacgactccttggtccagcattgaaagcaatgaacttgtaagaaggtacatgaattgtccctc |
36668160 |
T |
|
| Q |
172 |
ctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcc |
241 |
Q |
| |
|
|| ||| || ||||| ||||| || |||||||||| ||| |||||||||||||||| |||| |||||| |
|
|
| T |
36668161 |
ctttcttagaaacccacctctctggtttaaattccaagcaatcttctccccatatttcctccacccttcc |
36668230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 12175734 - 12175822
Alignment:
| Q |
72 |
accatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatg |
160 |
Q |
| |
|
||||| ||||| | ||||||||| |||||||| |||| |||||| || ||||| | ||||||||| |||||||||||||| || ||||| |
|
|
| T |
12175734 |
accattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatg |
12175822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 12164209 - 12164365
Alignment:
| Q |
72 |
accatcttcatttgaatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtc |
171 |
Q |
| |
|
||||| ||||| | ||||||||| |||||||| |||| |||||| || ||||| | ||| ||||| |||||||||||||| || |||| | || || |
|
|
| T |
12164209 |
accattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatccctc |
12164308 |
T |
|
| Q |
172 |
ctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatattt |
228 |
Q |
| |
|
|| | | || | ||| ||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
12164309 |
ctttttgagaaatccacctctctggcttaaattccaagcaatcttctccccatattt |
12164365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 31380325 - 31380253
Alignment:
| Q |
74 |
catcttcatttgaatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttg |
146 |
Q |
| |
|
|||||| ||||||||||| |||| ||| || || |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31380325 |
catcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg |
31380253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 3321789 - 3321647
Alignment:
| Q |
86 |
aatgaagctaatatccttgcccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacc |
185 |
Q |
| |
|
|||||| || || ||||| |||| |||||| || ||||| | ||||||||| || ||||||||||| |||||||| || || | |||| ||| || | | |
|
|
| T |
3321789 |
aatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatc |
3321690 |
T |
|
| Q |
186 |
catctctcaggcttaaattccatgcagtcttctccccatattt |
228 |
Q |
| |
|
|| ||||| || ||||| |||| ||| ||||||||||| |||| |
|
|
| T |
3321689 |
cacctctctggtttaaactccaagcaatcttctccccaaattt |
3321647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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