View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3177_low_9 (Length: 306)
Name: NF3177_low_9
Description: NF3177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3177_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 32812505 - 32812763
Alignment:
| Q |
38 |
agcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatat |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812505 |
agcaaaaacgaataagttataacaaaataaatatatagtatatgatagaagtagtctgataaatattaaacatggatattatatagtaatgataacatat |
32812604 |
T |
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| Q |
138 |
ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtcgtggtat |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32812605 |
ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtagtggtat |
32812704 |
T |
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| Q |
238 |
attgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg |
296 |
Q |
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| T |
32812705 |
attgtcaccatctttatcagtcattactatcttcaatccaactcttaaagtgacctttg |
32812763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 776604 - 776322
Alignment:
| Q |
18 |
actagtcttttgacccgtgca-----gcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatgg |
112 |
Q |
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| T |
776604 |
actagtcttttgacccgtgcaatagagcaaaaacgaatatgttataacaaaataaatatatagtatctgatagaaatagtttgataagtattaaacatgg |
776505 |
T |
|
| Q |
113 |
atattatatagtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataa |
212 |
Q |
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| T |
776504 |
atattatatagtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatg-tcatcattatacattacaaaatatttcatgataa |
776406 |
T |
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| Q |
213 |
acgtcatttgagatcgtcgtggtatattgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg |
296 |
Q |
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| T |
776405 |
acgtcatttgagatcgtagtggtatattgtcaccatctttatcagtcattactatcttcaatccatctcttaaagtgacctttg |
776322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 5739612 - 5739684
Alignment:
| Q |
151 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
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||||||| ||||| |||| |||||| |||||||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
5739612 |
tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga |
5739684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 5776724 - 5776796
Alignment:
| Q |
151 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
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| T |
5776724 |
tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga |
5776796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 47309410 - 47309343
Alignment:
| Q |
157 |
aattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgag |
224 |
Q |
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| T |
47309410 |
aattattgttaaatttttacgttcatcatcatacattacaaaatgcttcgtgataaacaacatttgag |
47309343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 29692702 - 29692772
Alignment:
| Q |
68 |
atatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatatt |
138 |
Q |
| |
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| T |
29692702 |
atatatagtatccaatagaagttgtatgataaaatttaaacatggatattatacagcaatgatcacatatt |
29692772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 43784857 - 43784785
Alignment:
| Q |
151 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
| |
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||||||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| |||||| ||||||| |
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| T |
43784857 |
tagtctagttattgttaatgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga |
43784785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 9795070 - 9794998
Alignment:
| Q |
151 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
| |
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||||||| |||||||||| |||||| || ||||| ||| |||| |||||||||||| |||||| ||||||| |
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| T |
9795070 |
tagtctagttattgttaacgttttacatttatcatcatatgttacgaaatatttcatggtaaacgacatttga |
9794998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 23761217 - 23761145
Alignment:
| Q |
151 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
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||||||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| |||||| ||||||| |
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| T |
23761217 |
tagtctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga |
23761145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 26666021 - 26665952
Alignment:
| Q |
154 |
tctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
223 |
Q |
| |
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|||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| | |||| ||||||| |
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| T |
26666021 |
tctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggttaacgacatttga |
26665952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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