View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_high_15 (Length: 238)
Name: NF3178_high_15
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_high_15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 9268082 - 9267866
Alignment:
| Q |
22 |
aaatatactctcaatttggaaacaaaaacacctgcattgcaggcactgcacttcagttccatttccttcaacaacnnnnnnnnttcaacagagaaattga |
121 |
Q |
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| T |
9268082 |
aaatagactctcaatttggaaacaaaaacacttgctttgcacgcacagcacttcagttccatttccttcaacaacaacaaaaattcaacagagaaactga |
9267983 |
T |
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| Q |
122 |
gcaagatggcatcgttgaacaatgaaattcatgttgttgtggaacagcaaccaccaccagctcttccaaccacaactcctctcacggtggaaagcatcca |
221 |
Q |
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| T |
9267982 |
gcaagatggcatcattgaacaatgaaattcatgttgttgtggaacagcaaccaccaccagctcctccaaccacaactcctgtcacggtggaaagcatcca |
9267883 |
T |
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| Q |
222 |
gggatgccaccgctcgc |
238 |
Q |
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| T |
9267882 |
gggatgctaccgctcgc |
9267866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 9262818 - 9263038
Alignment:
| Q |
18 |
atataaatatactctcaatttggaaacaaaaacacctgcattgcaggcactgcacttcagttccatttccttcaacaacnnnnnnnnttcaacagagaaa |
117 |
Q |
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| T |
9262818 |
atataaatagactctcaatttggaaacaaaaacacttgcattgcacgcactgcacttcagttccatttcctttaacaacaaaaaaaattcaacagagaaa |
9262917 |
T |
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| Q |
118 |
ttgagcaagatggcatcgttgaacaatgaaattcatgttgttgtggaacagcaaccaccaccagctcttccaaccacaactcctctcacggtggaaagca |
217 |
Q |
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| T |
9262918 |
ttgagcaagatgacatcattgaacaatgaaattcagattgttgtggaacagccaccactagcagctcctccaaccacaactcctctcacggtgaaaagaa |
9263017 |
T |
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| Q |
218 |
tccagggatgccaccgctcgc |
238 |
Q |
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| T |
9263018 |
tccagggatgctaccgctcgc |
9263038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 9267351 - 9267572
Alignment:
| Q |
18 |
atataaatatactctcaatttggaaacaaaaacacctgcattgcaggcactgcacttcagttccatttccttcaacaacnnnnnnnnt-tcaacagagaa |
116 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9267351 |
atataaatagactctcaatttggaaacaaaaacacttgcattgcacgcactgcacttcagttccatttcctttaacaacaaaaaaaaaatcaacagagaa |
9267450 |
T |
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| Q |
117 |
attgagcaagatggcatcgttgaacaatgaaattcatgttgttgtggaacagcaaccaccaccagctcttccaaccacaactcctctcacggtggaaagc |
216 |
Q |
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| T |
9267451 |
actgagcaagatggcatcattgaacaatgaaattcagattgttgtggaacagccaccaccagcagctcctccaaccacaactcctctcaaggtggaaagc |
9267550 |
T |
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| Q |
217 |
atccagggatgccaccgctcgc |
238 |
Q |
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| T |
9267551 |
atccagggatgctaccgctcgc |
9267572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 9263807 - 9263586
Alignment:
| Q |
18 |
atataaatatactctcaatttggaaacaaaaacacctgcattgcaggcactgcacttcagttccatttccttcaacaacnnnnnnnnt-tcaacagagaa |
116 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9263807 |
atataaatagactctcaatttggaaacaaaaacacttgcattgcacgcactgcacttcagttccatttcctttaacaacaaaaaaaaaatcaacagagaa |
9263708 |
T |
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| Q |
117 |
attgagcaagatggcatcgttgaacaatgaaattcatgttgttgtggaacagcaaccaccaccagctcttccaaccacaactcctctcacggtggaaagc |
216 |
Q |
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| T |
9263707 |
actaagcaagatggcatcattgaacaatgaaattcagattgttgtggaacagccaccaccagcagctcctccaaccacaactcctctcacggtggaaagc |
9263608 |
T |
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| Q |
217 |
atccagggatgccaccgctcgc |
238 |
Q |
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| T |
9263607 |
atccagggattctaccgctcgc |
9263586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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