View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_high_4 (Length: 379)
Name: NF3178_high_4
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 34951631 - 34951280
Alignment:
| Q |
16 |
tgatcattgtttatcttcgatggttcggttactgaacactccaactcttgttgacgcgtacaatcatttagggaaatggacttgtggagaggatctcaca |
115 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951631 |
tgatcattgtttatcttcaatggttcggttgctgaacactccaactcttgttgacgcgtacaatcatttagggaaatggacttgtggagaggatctcaca |
34951532 |
T |
|
| Q |
116 |
attgttgagactgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagttttaatgatgctatggaaagtgattctc |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951531 |
attgttgagaccgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagttttaatgatgctatggaaagtgattctc |
34951432 |
T |
|
| Q |
216 |
atgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattat |
315 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951431 |
atgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattat |
34951332 |
T |
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| Q |
316 |
ttgtgaggcgtttccagagttgaagtacactgtcttggaccttccacaggtt |
367 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34951331 |
ttgtgaggcgtttccagagctgaagtacactgtcttggaccttccacaggtt |
34951280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 34947160 - 34946809
Alignment:
| Q |
16 |
tgatcattgtttatcttcgatggttcggttactgaacactccaactcttgttgacgcgtacaatcatttagggaaatggacttgtggagaggatctcaca |
115 |
Q |
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|||||||||||||||||| ||||||||||| ||||||| |||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947160 |
tgatcattgtttatcttcaatggttcggttgctgaacattccacctattgttggctcgtacaatcatttagggaaatggacttgtggagaggatctcaca |
34947061 |
T |
|
| Q |
116 |
attgttgagactgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagttttaatgatgctatggaaagtgattctc |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34947060 |
attgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagacttttaatgatgctatggaaagtgattctc |
34946961 |
T |
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| Q |
216 |
atgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattat |
315 |
Q |
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| T |
34946960 |
atgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattat |
34946861 |
T |
|
| Q |
316 |
ttgtgaggcgtttccagagttgaagtacactgtcttggaccttccacaggtt |
367 |
Q |
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|||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
34946860 |
atgtgaggcgtttccagagctgaagtacattgtcctggaccttccacaggtt |
34946809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 8074887 - 8074748
Alignment:
| Q |
191 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtg |
290 |
Q |
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|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||||| || | ||| |||||||||||||| |||| |
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| T |
8074887 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtg |
8074788 |
T |
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| Q |
291 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
330 |
Q |
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|||| |||||||| | ||| |||||||||||||||||||| |
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| T |
8074787 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
8074748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 8066452 - 8066313
Alignment:
| Q |
191 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtg |
290 |
Q |
| |
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|||||||||||||| ||||| ||| || | ||||||| || |||| ||||| || || |||||||| || || ||| |||||||||||||| |||| |
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| T |
8066452 |
aatgatgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtg |
8066353 |
T |
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| Q |
291 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
330 |
Q |
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|||| |||||||| | ||| ||||||| |||||||||||| |
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| T |
8066352 |
gaaccggaaacacggttaaaattatttctgaggcgtttcc |
8066313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 34343578 - 34343663
Alignment:
| Q |
254 |
tttgaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattatttgtgaggcgtttccagagttgaa |
339 |
Q |
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||||||||||||| ||| | || |||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||| |
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| T |
34343578 |
tttgaagggattgattctattgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaa |
34343663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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