View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_10 (Length: 346)
Name: NF3178_low_10
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 32534473 - 32534138
Alignment:
| Q |
1 |
tgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattcaagcatgatt |
100 |
Q |
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| T |
32534473 |
tgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattcaagcatgatt |
32534374 |
T |
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| Q |
101 |
gaattgtgtaggttagaaggatccaatataatatttgctagctattttggagtgtctaggctgttagtcatgcccttatttgcgagggttactagtccct |
200 |
Q |
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| T |
32534373 |
gaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgttagtcatgcccttatttgtgagggttactagtccct |
32534274 |
T |
|
| Q |
201 |
gttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcctgcttttacttctgtgagggtcatctcgtgcattagttgttactat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534273 |
gttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcttgctcttacttctgtgagggtcatctcgtgcattagttgttactat |
32534174 |
T |
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| Q |
301 |
ctctgtagctaggatcacaggcttctacgtcctttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32534173 |
ctctgtagctaggatcacaggcttctacgtcctttg |
32534138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 32549534 - 32549445
Alignment:
| Q |
152 |
gtgtctaggctgttagtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcattt |
241 |
Q |
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| T |
32549534 |
gtgtctaggctgttagtagtgccctttattgtgacgctcatttgtccttgttggctaatgaatgttaactcaagtctttagatttcattt |
32549445 |
T |
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