View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_12 (Length: 257)
Name: NF3178_low_12
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4364113 - 4364358
Alignment:
| Q |
1 |
cataacataaataagaaaattactacagacaatacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaactta |
100 |
Q |
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| T |
4364113 |
cataacataaataagaaaattactacagacagtacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaactta |
4364212 |
T |
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| Q |
101 |
agcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364213 |
agcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaa |
4364312 |
T |
|
| Q |
201 |
caataatcttccatttaattttcatcttcatatccatcttcatctc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364313 |
caataatcttccatttaattttcatcttcatatccatcttcatctc |
4364358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4368502 - 4368745
Alignment:
| Q |
1 |
cataacataaataagaaaattactacagacaatacactacacttaattcaaac-ccataggtaattcatacacaattcataagtcacaaattacaaactt |
99 |
Q |
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||||||||| |||||||||| ||| |||||||||||||| |||||||||||| ||||||| || |||||||||| | ||||||||||||||| ||||| |
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| T |
4368502 |
cataacatatataagaaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaactt |
4368601 |
T |
|
| Q |
100 |
aagcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaa |
199 |
Q |
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| T |
4368602 |
aagctataatattaagcttttcacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatg-ctttcaaaataaaa |
4368700 |
T |
|
| Q |
200 |
acaataatcttccatttaattttcatcttcatatccatcttcatct |
245 |
Q |
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| T |
4368701 |
ac-ataatcttccatttaattttcatctccatcttcatcttcatct |
4368745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 4358738 - 4358913
Alignment:
| Q |
2 |
ataacataaataagaaaattactacagacaatacactacacttaa-ttc-aaacccataggtaattcatacacaattcataagtcacaaattacaaactt |
99 |
Q |
| |
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||||||||||||||||||| || ||| ||| |||||| |||||| ||| ||||||||||| || || |||||||||||||||||| || | |||| ||| |
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| T |
4358738 |
ataacataaataagaaaatcacaacaaacactacactgaacttaaattcgaaacccataggaaagtcgtacacaattcataagtcagaattaacaa-ctt |
4358836 |
T |
|
| Q |
100 |
aagcttgagtatt-aagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaa |
175 |
Q |
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| T |
4358837 |
aagctatagtatttaagcttttagcaagtgacaagctctaaacacccaaaacaaggagtcaaattctagatatttaa |
4358913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 4388367 - 4388491
Alignment:
| Q |
4 |
aacataaataagaaaattactacagacaatacactacacttaattcaaa-cccataggtaattcatacacaattcataagtcacaaattacaaacttaag |
102 |
Q |
| |
|
|||||| |||||||||| ||||||| || || || |||||| ||||| |||||| | || || ||||||||||||||||||||||| | |||||| |
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| T |
4388367 |
aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag |
4388466 |
T |
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| Q |
103 |
cttgagtattaagcttttaacaagt |
127 |
Q |
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|| ||||||||||||||||||||| |
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| T |
4388467 |
ctatagtattaagcttttaacaagt |
4388491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 4375758 - 4375818
Alignment:
| Q |
69 |
acacaattcataagtcacaaattacaaacttaagc--ttgagtattaagcttttaacaagt |
127 |
Q |
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|||||||||||||||||||||||| || ||||||| | |||||||||||||||| |||| |
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|
| T |
4375758 |
acacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagt |
4375818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 5727095 - 5727059
Alignment:
| Q |
69 |
acacaattcataagtcacaaattacaaacttaagctt |
105 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| |
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| T |
5727095 |
acacaattcataagtcacaaattataaccttaagctt |
5727059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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