View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3178_low_14 (Length: 246)
Name: NF3178_low_14
Description: NF3178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3178_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32534504 - 32534731
Alignment:
| Q |
1 |
tgtatttttattttagcattatattaagtttgcacgttgtatcttagcccatcatgtcttgtagaatctacaattggtcatcacatgtcaatgagctctt |
100 |
Q |
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| T |
32534504 |
tgtatttttatgttagcattatattaagtttgcacgttgtatcttagcccatcatgtcttgtagaatctacaattggtcatcacatgtcaatgacctctt |
32534603 |
T |
|
| Q |
101 |
gttattctagacatgtcctgcacatgcttcctagcttgatacaatttgtcaccaaaactcagttcgcattcatatcagtaaatttctgggatgctattca |
200 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32534604 |
gttattctatacatgtcctacacatgcttcctagcttgatacaatttgtcaccaaaactcagttcgcattcatatcactaaatttctgggatgctattca |
32534703 |
T |
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| Q |
201 |
gttttccttcaatactcactaatactac |
228 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
32534704 |
gttttccttcaatactcaccaatactac |
32534731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 32549959 - 32549995
Alignment:
| Q |
128 |
ttcctagcttgatacaatttgtcaccaaaactcagtt |
164 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32549959 |
ttcctagcttgatacaatttgtctccaaaactcagtt |
32549995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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